Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 3e-11 seq35 84.2 9e-11 seq3 84.2 9e-11 seq2 84.2 9e-11 >seq5 Length=491035 Score = 86.0 bits (94), Expect = 3e-11 Identities = 100/134 (75%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 349091 AGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACG---CCGGCAAAGTGGAAGGTC 349147 |||| || |||||||| ||||||||| ||||| || || || | |||||| || Sbjct 82309 AGTCGCGGAATGCCCAGCGTCACGTTCA---CCGCGCCGTGCCCCGCCAGGTGGAACGTG 82365 Query 349148 TGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATC 349207 | || |||| |||||| |||||||||||| |||| ||||||| || ||| ||| Sbjct 82366 TTCAGCGTCATCTGCGTCGCGGGCTCGCCGATCGACTGTCCCGCGATGACGCCCACCGAG 82425 Query 349208 TCGCCGGGCGCGGC 349221 ||||||||| |||| Sbjct 82426 TCGCCGGGCTCGGC 82439 >seq35 Length=1031885 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||| || | |||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 602682 ATCTCCTCCAGACGCGGCACGCCCAGCGTCACGTTCTTCGCGGACACACCGGCGAAGTGG 602741 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCC 349200 || || | || |||| |||||| |||||||||||| |||| | |||| ||| || Sbjct 602742 AACGTGTTCAGCGTCATCTGCGTCGCGGGCTCGCCGATCGACTGCGCGGCGACGATTCC 602800 >seq3 Length=640322 Score = 84.2 bits (92), Expect = 9e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 448984 GGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGAT 449043 || ||||| | ||| || ||||||||| || ||| |||| | ||||| |||||| Sbjct 338873 GGACTCGATGAGCATTCCGATGGTCATGCGGGAGGGGAAGGCGTTGGGGTTGATGATGCA 338932 Query 449044 GTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTC-CTCGGGGTTGACCACCAGGCCGT 449102 ||||||||| ||||| ||| ||||||||||||| || | | | || || | | Sbjct 338933 GTCGGGCGTGATGCCGGAGGCGGTGAAGGGCATGTCGATCTGCGGCCA-CAGCACGGAGA 338991 Query 449103 TGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCG 449157 ||||||||||| ||||| || | |||||||||| ||| | | || ||||| Sbjct 338992 GCACGCCCTTCTGCCCGTGCCGCGAGGAGAACTTGTCGCCCACCACCGGGTTGCG 339046 >seq2 Length=1866585 Score = 84.2 bits (92), Expect = 9e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 448984 GGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGAT 449043 || ||||| | ||| || ||||||||| || ||| |||| | ||||| |||||| Sbjct 90377 GGACTCGATGAGCATTCCGATGGTCATGCGGGAGGGGAAGGCGTTGGGGTTGATGATGCA 90318 Query 449044 GTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTC-CTCGGGGTTGACCACCAGGCCGT 449102 ||||||||| ||||| ||| ||||||||||||| || | | | || || | | Sbjct 90317 GTCGGGCGTGATGCCGGAGGCGGTGAAGGGCATGTCGATCTGCGGCCA-CAGCACGGAGA 90259 Query 449103 TGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCG 449157 ||||||||||| ||||| || | |||||||||| ||| | | || ||||| Sbjct 90258 GCACGCCCTTCTGCCCGTGCCGCGAGGAGAACTTGTCGCCCACCACCGGGTTGCG 90204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084737722441092