Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 3e-15 seq457 75.2 2e-11 seq2 75.2 2e-11 >seq5 Length=3486096 Score = 87.8 bits (96), Expect = 3e-15 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | |||||| |||| |||||| ||||| | | Sbjct 693853 AGTACAGGAATATTAACCTGTTTT-CCATCGACTACGCCTTTCGGCCTCGCCTTAGGTGC 693795 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| |||||| ||||||| || || ||||||||||| ||||||||||| | ||||| Sbjct 693794 CGACTAACCCTGCCCCGATTAACGTTGGACAGGAAACCTTGGTCTTTCGGCGTGCGGGTT 693735 Query 323 TCCCACCC 330 | ||||| Sbjct 693734 TTTCACCC 693727 >seq457 Length=62169 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/121 (74%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 210 GAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTA 269 ||||| |||| | | | |||||| |||| |||||| ||||| | ||| || | Sbjct 47021 GAATATTAACTGCAT-TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAA 46963 Query 270 CCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACC 329 ||||| |||||||||| || |||||| |||| | ||||||||||| |||| || |||| Sbjct 46962 CCCTGCGCCGATTAGCGTTGCGCAGGAACCCTTGGACTTTCGGCGAGCGGGTCTCTCACC 46903 Query 330 C 330 | Sbjct 46902 C 46902 >seq2 Length=6328565 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/121 (74%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 210 GAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTA 269 ||||| |||| | | | |||||| |||| |||||| ||||| | ||| || | Sbjct 5616497 GAATATTAACTGCAT-TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAA 5616555 Query 270 CCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACC 329 ||||| |||||||||| || |||||| |||| | ||||||||||| |||| || |||| Sbjct 5616556 CCCTGCGCCGATTAGCGTTGCGCAGGAACCCTTGGACTTTCGGCGAGCGGGTCTCTCACC 5616615 Query 330 C 330 | Sbjct 5616616 C 5616616 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/121 (74%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 210 GAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTA 269 ||||| |||| | | | |||||| |||| |||||| ||||| | ||| || | Sbjct 6276268 GAATATTAACTGCAT-TCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAA 6276210 Query 270 CCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACC 329 ||||| |||||||||| || |||||| |||| | ||||||||||| |||| || |||| Sbjct 6276209 CCCTGCGCCGATTAGCGTTGCGCAGGAACCCTTGGACTTTCGGCGAGCGGGTCTCTCACC 6276150 Query 330 C 330 | Sbjct 6276149 C 6276149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959992972800