Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq5 188 5e-46 seq19 156 3e-36 seq558 89.7 4e-16 seq3 80.6 2e-13 seq2 75.2 8e-12 >seq5 Length=3486096 Score = 188 bits (208), Expect = 5e-46 Identities = 116/124 (94%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 685949 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTGACCGCCC 685890 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 685889 TCCCGAAGGTTAGACTAGCCACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 685830 Query 135 TGTA 138 |||| Sbjct 685829 TGTA 685826 >seq19 Length=1029424 Score = 156 bits (172), Expect = 3e-36 Identities = 109/124 (88%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| ||||||||||||||||||||| |||| ||||| | || || Sbjct 837515 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAACCACACCGTGGTGATCGTCC 837574 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 |||||||||||| ||| | |||||| ||||| |||||||||||||||||||||||||| Sbjct 837575 TCCCGAAGGTTAGACTAACCACTTCTGGTGCAATCCACTCCCATGGTGTGACGGGCGGTG 837634 Query 135 TGTA 138 |||| Sbjct 837635 TGTA 837638 >seq558 Length=35882 Score = 89.7 bits (98), Expect = 4e-16 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| ||| | |||| | || Sbjct 15398 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGATCCTACCGTGGCCGCCTGCC 15457 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 |||||||||||| | | | || | |||| |||||||||||||||||||||||| Sbjct 15458 TCCCGAAGGTTAGCGCAGCGTCGTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGGTG 15517 Query 135 TGTA 138 |||| Sbjct 15518 TGTA 15521 >seq3 Length=4400433 Score = 80.6 bits (88), Expect = 2e-13 Identities = 97/126 (77%), Gaps = 6/126 (5%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTC-ATGAATCACAAAGTGGTAAGCGCC 73 |||||||| ||||||||| |||||||||||||||| |||| | | |||| || | Sbjct 2141930 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGAA-CCTACCGTGGCTTGCTGC 2141872 Query 74 CTCCCGAAGGTTAAGCT-ACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 || |||||| | |||| || |||| | | || |||||||||||||||||||||| Sbjct 2141871 CT-CCGAAG--TTAGCTCACAATCTTCGGGTAGATCCAACTCCCATGGTGTGACGGGCGG 2141815 Query 133 TGTGTA 138 |||||| Sbjct 2141814 TGTGTA 2141809 >seq2 Length=6328565 Score = 75.2 bits (82), Expect = 8e-12 Identities = 91/124 (73%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 ||||| || ||||||||| |||||||||||||||| | | | ||||| ||| || Sbjct 5619004 CCCTAGGGCTACCTTGTTACGACTTCACCCCAGTCGCTGAGCCTACCGTGGTCAGCTGCC 5619063 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 || | ||||| || |||| | | || |||||||||||||||||||||||| Sbjct 5619064 CCCTTACGGTTAGCGCACTGCCTTCGGGTAAACCCAACTCCCATGGTGTGACGGGCGGTG 5619123 Query 135 TGTA 138 |||| Sbjct 5619124 TGTA 5619127 Score = 75.2 bits (82), Expect = 8e-12 Identities = 91/124 (73%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 ||||| || ||||||||| |||||||||||||||| | | | ||||| ||| || Sbjct 6273761 CCCTAGGGCTACCTTGTTACGACTTCACCCCAGTCGCTGAGCCTACCGTGGTCAGCTGCC 6273702 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 || | ||||| || |||| | | || |||||||||||||||||||||||| Sbjct 6273701 CCCTTACGGTTAGCGCACTGCCTTCGGGTAAACCCAACTCCCATGGTGTGACGGGCGGTG 6273642 Query 135 TGTA 138 |||| Sbjct 6273641 TGTA 6273638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345597628320