Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq638 221 2e-55 seq176 104 4e-20 >seq638 Length=20530 Score = 221 bits (244), Expect = 2e-55 Identities = 171/198 (86%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| ||||||||||||| |||| ||||||| ||||||||||| |||||||||||| | Sbjct 4992 GTACAAGGGGCAGGGACGTAATCAATGCGAGCT-GATGACTCGCGTTTACTAGGAATT-C 4935 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| |||| ||||||||| ||||||||||||| ||||||||| | ||||| ||||| Sbjct 4934 CTCGTTTAAGATCAACAATTGAAATGATCTATCCCTATCACGATGCACGTTCAACAGATT 4875 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| ||| ||| || ||| | | | ||||||| || |||||||||||||||||||| Sbjct 4874 ACCCGGGCCTCTCGACCCAGGAAAAAAAACTCGTTGCATGCATCAGTGTAGCGCGCGTGC 4815 Query 179 GGCCCAGAACATCTAAGG 196 ||||||| |||||| ||| Sbjct 4814 GGCCCAGGACATCTGAGG 4797 >seq176 Length=273811 Score = 104 bits (114), Expect = 4e-20 Identities = 91/111 (82%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||||| || ||||| || | | || |||| || |||||||||||||||||||| Sbjct 158090 TACCCGGGGCT--CGGCCGAGATAAAGAACAAGTTGGATGCATCAGTGTAGCGCGCGTGC 158033 Query 179 GGCCCAGAACATC-TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||| ||||| |||||||||||| | |||||||||||| | ||||||| Sbjct 158032 GGCCCAGGACATCTTAAGGGCATCACGGGCCTGTTATTGCCCCCAACTTCC 157982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751994667380