Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-28 seq19 122 9e-26 >seq5 Length=3486096 Score = 131 bits (144), Expect = 2e-28 Identities = 138/178 (78%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 4 CCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGAT 63 ||||||||||||| | ||||||||||||||||||||||| |||| | ||| |||||| Sbjct 694037 CCTGAAGCTTAGAGGATTTTCTTGGAAGCATGGCATCAATCACTCAG--ATC-AAAAGAG 693981 Query 64 AACT-CGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCA 122 | || || |||| | |||||||| | ||||||||| |||||| | |||||||| Sbjct 693980 ATCTTCGCTATCACGCCTCGGCCTTAAGAACCCGGATTTGCCTAAGTTCTCAGCCTACAC 693921 Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 |||| | ||||||||| |||| ||| |||||||||||||| | |||||||| Sbjct 693920 GCTTAGATCGGGACAACCATCGCCCGTCTGATTTAGCCTTCTCCGTCACCCCATCGCA 693863 >seq19 Length=1029424 Score = 122 bits (134), Expect = 9e-26 Identities = 136/179 (76%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 4 CCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGAT 63 ||||||||||||||| ||||| ||||||||||||||||| ||||| |||| || Sbjct 835146 CCTGAAGCTTAGAAGATTTTCCTGGAAGCATGGCATCAATGACTTCCCGCTCTATGAGC- 835204 Query 64 AACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAG--CCTACC 121 | ||||| ||| || ||| || ||||||||| |||||| |||| ||||| Sbjct 835205 -AGTCGTCGTCACGTCTCGGGATTGTGGACCCGGATTTGCCTAAG--TCCACTCCCTACT 835261 Query 122 ACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 ||||||| |||||||| |||| ||| |||||||||||||||| |||||||||| Sbjct 835262 CGCTTAAACCGGGACAACCGTCGCCCGGCTCACCTAGCCTTCTCCGTCTCTCCATCGCA 835320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518396323896