Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-24 seq2 95.1 1e-17 seq457 91.5 1e-16 seq318 91.5 1e-16 seq558 80.6 3e-13 seq4 73.4 4e-11 >seq1 Length=7344524 Score = 116 bits (128), Expect = 4e-24 Identities = 93/110 (85%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||||||||||| ||| || |||||||||| ||||||||||||||||||| Sbjct 3207244 ACGGGGGATGCCTAGGCTCTCAGAGATGACGAAGGACGTGGTAAGCTGCGAAAAGCTACG 3207185 Query 66 GGGATTGGCACATACGAAT--TGATCCGTAGATATCCGAATGGGGCAACC 113 |||| | || |||| | |||||||||||| ||||||||||| |||| Sbjct 3207184 GGGA--AGTGCAAACGACTTATGATCCGTAGATGTCCGAATGGGGAAACC 3207137 Score = 116 bits (128), Expect = 4e-24 Identities = 93/110 (85%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||||||||||| ||| || |||||||||| ||||||||||||||||||| Sbjct 5225805 ACGGGGGATGCCTAGGCTCTCAGAGATGACGAAGGACGTGGTAAGCTGCGAAAAGCTACG 5225864 Query 66 GGGATTGGCACATACGAAT--TGATCCGTAGATATCCGAATGGGGCAACC 113 |||| | || |||| | |||||||||||| ||||||||||| |||| Sbjct 5225865 GGGA--AGTGCAAACGACTTATGATCCGTAGATGTCCGAATGGGGAAACC 5225912 >seq2 Length=6328565 Score = 95.1 bits (104), Expect = 1e-17 Identities = 131/181 (72%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| ||||||| ||||||||||||| ||||||| ||| Sbjct 5617845 GGCATTCGGTGGATGCCTTGGCGACAAGAGGCGATGAAGGACGTGATACGCTGCGATAAG 5617786 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | ||||| || ||| | ||||||||| || ||||||||||| ||||| | Sbjct 5617785 TCATGGGGAGCTGCGAATAAGCTTTGATCCGTGAATTTCCGAATGGGGGAACCCACTCCG 5617726 Query 121 T-TGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 | ||||| || | ||| ||| || ||| ||||||||||||||||||||| Sbjct 5617725 TATGGAG---TACC----CGCAAGG----GAGCAAACCCGGGGAACTGAAACATCTAAGT 5617677 Query 180 A 180 | Sbjct 5617676 A 5617676 Score = 95.1 bits (104), Expect = 1e-17 Identities = 131/181 (72%), Gaps = 12/181 (7%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| ||||||| ||||||||||||| ||||||| ||| Sbjct 6274920 GGCATTCGGTGGATGCCTTGGCGACAAGAGGCGATGAAGGACGTGATACGCTGCGATAAG 6274979 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | ||||| || ||| | ||||||||| || ||||||||||| ||||| | Sbjct 6274980 TCATGGGGAGCTGCGAATAAGCTTTGATCCGTGAATTTCCGAATGGGGGAACCCACTCCG 6275039 Query 121 T-TGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 | ||||| || | ||| ||| || ||| ||||||||||||||||||||| Sbjct 6275040 TATGGAG---TACC----CGCAAGG----GAGCAAACCCGGGGAACTGAAACATCTAAGT 6275088 Query 180 A 180 | Sbjct 6275089 A 6275089 >seq457 Length=62169 Score = 91.5 bits (100), Expect = 1e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 9 GTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGG 68 |||||||||| || | |||||| ||||||||||||| |||||||||||| ||||| Sbjct 43415 GTGGATGCCTTGGGATGCACAGGCGATGAAGGACGTGATACGCTGCGAAAAGCGTCGGGG 43474 Query 69 ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC 113 | || ||| | |||||||| ||||||||||||||| |||| Sbjct 43475 AGCTGCGAATAAGCTTTGATCCGATGATATCCGAATGGGGAAACC 43519 >seq318 Length=132058 Score = 91.5 bits (100), Expect = 1e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||| ||||||| || ||| ||||||||| |||| || | ||||| ||| || Sbjct 46631 ACGGCGGATACCTAGGCATTCAGAGTCGAAGAAGGGCGTGGAAACCGACGAAACGCTTCG 46690 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTG 123 |||| | | | | | | |||||||| |||| |||||||||||||||| ||||| || Sbjct 46691 GGGAGTTGGAAACAAGCTTTGATCCGGAGATTCCCGAATGGGGCAACCCTATATACTG 46748 >seq558 Length=35882 Score = 80.6 bits (88), Expect = 3e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | ||||||| ||||||||||||| |||||| ||||| ||| Sbjct 14449 GGTGGATGCCTTGGCAGTAAGAGGCGATGAAGGACGTGATACTCTGCGATAAGCTTGGGG 14390 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || | ||| | ||||||| ||| ||||||||||| ||||| Sbjct 14389 GAGCCGAGAATAGGCTTTGATCCCAGGATTTCCGAATGGGGGAACCC 14343 >seq4 Length=3599618 Score = 73.4 bits (80), Expect = 4e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| || ||| |||||| || || |||||| ||||| || | | |||||||||||| Sbjct 2865770 GGCACACAGTGAATGCCTTGGTGCTAACAGGCGATGAAGGGCGCGGTCAGCTGCGAAAAG 2865711 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC 113 || |||||| | | | | |||||||| |||| |||||||||| |||| Sbjct 2865710 CTTCGGGGAGCAGTGAACATGCTTTGATCCGGAGATTCCCGAATGGGGTAACC 2865658 Score = 73.4 bits (80), Expect = 4e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| || ||| |||||| || || |||||| ||||| || | | |||||||||||| Sbjct 3218210 GGCACACAGTGAATGCCTTGGTGCTAACAGGCGATGAAGGGCGCGGTCAGCTGCGAAAAG 3218151 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC 113 || |||||| | | | | |||||||| |||| |||||||||| |||| Sbjct 3218150 CTTCGGGGAGCAGTGAACATGCTTTGATCCGGAGATTCCCGAATGGGGTAACC 3218098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476796618892