Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-32 seq4 118 1e-24 seq318 114 1e-23 seq19 82.4 8e-14 seq5 82.4 8e-14 seq3 82.4 8e-14 seq457 80.6 3e-13 >seq1 Length=7344524 Score = 143 bits (158), Expect = 3e-32 Identities = 139/176 (79%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || ||| || ||||||| |||||| ||| || || Sbjct 3205694 CGTAAACCGACACAGGTAGTCGAGGAGAGTATCCTCAGGCGCTCGAGTGATTCATGGCTA 3205635 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATG-GG 140 |||||||||||||| || | |||||||||||| ||| ||||| ||| || || Sbjct 3205634 AGGAACTAGGCAAATTGGACGCGTAACTTCGGGA-GAAGCGTCCCCTCCC----TTGTGG 3205580 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||||||| ||| ||| |||||| |||||||| |||||||||||| || ||| || Sbjct 3205579 AGGGCGCAGTGAAAAGGCCCAGGCGACTGTTTAGCAAAAACACAGGACTCTGCGAA 3205524 Score = 143 bits (158), Expect = 3e-32 Identities = 139/176 (79%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || ||| || ||||||| |||||| ||| || || Sbjct 5227355 CGTAAACCGACACAGGTAGTCGAGGAGAGTATCCTCAGGCGCTCGAGTGATTCATGGCTA 5227414 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATG-GG 140 |||||||||||||| || | |||||||||||| ||| ||||| ||| || || Sbjct 5227415 AGGAACTAGGCAAATTGGACGCGTAACTTCGGGA-GAAGCGTCCCCTCCC----TTGTGG 5227469 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||||||| ||| ||| |||||| |||||||| |||||||||||| || ||| || Sbjct 5227470 AGGGCGCAGTGAAAAGGCCCAGGCGACTGTTTAGCAAAAACACAGGACTCTGCGAA 5227525 >seq4 Length=3599618 Score = 118 bits (130), Expect = 1e-24 Identities = 132/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| || | |||| |||||||| |||||| ||||||| | ||||| Sbjct 2864186 CGTAAACCGACACAGGTGGGTGGGTAGAATATACCAAGGCGTAAGAGTGAACCCTGGTTA 2864127 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || ||| |||||||||||| || |||| |||| | || | Sbjct 2864126 AGGAACTCGGCAAATTGGCCCCGTAACTTCGGGAGAAGGGGTACCTA-TGATTTATCATA 2864068 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| || ||| | |||||||| ||||||||||| | |||||| Sbjct 2864067 GGTCGCAGTGAAATGGCCCAACCGACTGTTTAGCAAAAACACAGCATTCTGCCAA 2864013 Score = 118 bits (130), Expect = 1e-24 Identities = 132/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| || | |||| |||||||| |||||| ||||||| | ||||| Sbjct 3216626 CGTAAACCGACACAGGTGGGTGGGTAGAATATACCAAGGCGTAAGAGTGAACCCTGGTTA 3216567 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || ||| |||||||||||| || |||| |||| | || | Sbjct 3216566 AGGAACTCGGCAAATTGGCCCCGTAACTTCGGGAGAAGGGGTACCTA-TGATTTATCATA 3216508 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| || ||| | |||||||| ||||||||||| | |||||| Sbjct 3216507 GGTCGCAGTGAAATGGCCCAACCGACTGTTTAGCAAAAACACAGCATTCTGCCAA 3216453 >seq318 Length=132058 Score = 114 bits (126), Expect = 1e-23 Identities = 127/166 (77%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| |||| || |||| |||| | ||| ||| | | | |||| Sbjct 48344 AAACCGACACAGGTAGGTGGGTAGAGAATACCAAGGGGAGCGAGAGAA-CTCTCTCTAAG 48402 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| || ||| |||||||||||| || |||| | ||| ||||||| || Sbjct 48403 GAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGTAC---CCCTCAAATGGGGGG 48459 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| |||||| |||||||| |||||||||||| || Sbjct 48460 TCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACACAGGTCT 48505 >seq19 Length=1029424 Score = 82.4 bits (90), Expect = 8e-14 Identities = 87/114 (76%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 8 GCTATCCGAG---GGAGCGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCT 64 ||||| |||| | | | ||||| |||||| || ||| ||| || |||| |||||||| Sbjct 835146 GCTATTCGAGACCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCT 835087 Query 65 TGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||| ||| ||| ||||||||||||||| || | |||||||||||| || Sbjct 835086 TGAGAGAACTCGGGTAAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAA 835033 >seq5 Length=3486096 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| ||||| || ||||||| || ||||||||||||||||| || ||| ||| Sbjct 694056 CAAACCAACACAGGTGGTCGGGTAGAGAATACTAAGGCGCTTGAGACAACTCTGGTGAAG 694115 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | |||||||||||| || Sbjct 694116 GAACTAGGCAAAATGGTACCGTAACTTCGGGAGAA 694150 >seq3 Length=4400433 Score = 82.4 bits (90), Expect = 8e-14 Identities = 128/179 (72%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | ||| || |||| |||||||||||| ||| | | | |||| Sbjct 2144276 AAACCGACACAGGTGGATAGGTAGAGAATACCAAGGCGCTTGAGAGAACGATGCTGAAGG 2144335 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC-CCAG--AAATGG-- 139 |||| |||||| | | | |||||||||||| || | | || || | || || | | Sbjct 2144336 AACTCGGCAAATTACCTCCGTAACTTCGGGAGAAGGAGGCCTCACTCTAGGCAACTAGAA 2144395 Query 140 --GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||| ||| ||| ||| || |||||||| ||||||||||||||| ||| || Sbjct 2144396 CTGAGGG-GCACAGACCAGGGGGTTGCGACTGTTTATCAAAAACACAGGGCTCTGCGAA 2144453 >seq457 Length=62169 Score = 80.6 bits (88), Expect = 3e-13 Identities = 128/183 (70%), Gaps = 13/183 (7%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || ||||||||||||||||| ||| | | | ||| Sbjct 47127 CAAACCGACACAGGTGGTCAGGTAGAGAATACTAAGGCGCTTGAGAGAACTATGTTGAAG 47186 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGG------GTCCCTACCC----AG 133 ||||| |||||| || | |||||||||| | || | || ||| | || Sbjct 47187 GAACTCGGCAAATTGCACGCGTAACTTCGGAAGAAGCGTGACCTGTATTTACGCAAGTAG 47246 Query 134 AAATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGC 193 | || ||| ||| ||| ||| || |||||||| ||||||||||||||| ||| Sbjct 47247 ATAT---AGGTGGCACAGACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGC 47303 Query 194 CAA 196 || Sbjct 47304 GAA 47306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531196233128