Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq19 188 7e-46 seq5 185 8e-45 seq3 114 1e-23 seq457 105 6e-21 seq2 105 6e-21 seq1 100 3e-19 seq318 87.8 2e-15 seq376 77.0 3e-12 seq60 77.0 3e-12 >seq19 Length=1029424 Score = 188 bits (208), Expect = 7e-46 Identities = 115/122 (94%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37 AGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCT 96 |||| | || ||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 834997 AGCTGAGACCAGTCGAAGATACCAGGCCCCTGCGACTGTTTATTAAAAACACAGCACTGT 834938 Query 97 GCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 156 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 834937 GCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 834878 Query 157 TG 158 || Sbjct 834877 TG 834876 >seq5 Length=3486096 Score = 185 bits (204), Expect = 8e-45 Identities = 123/137 (90%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 22 GGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTA 81 |||||||||||| |||||| | ||||| ||||| |||||| ||||||||||||||| | Sbjct 694171 GGGACTTGCTCCCTAAGCTGAGGCCGGCCGAAGTGACCAGGTGGCTGCGACTGTTTATCA 694230 Query 82 AAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGC 141 |||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 694231 AAAACATAGCACTCTGCAAACTCGTAAGAGGACGTATAGGGTGTGACGCCTGCCCGGTGC 694290 Query 142 CGGAAGGTTAATTGATG 158 |||||||||||||||| Sbjct 694291 TGGAAGGTTAATTGATG 694307 >seq3 Length=4400433 Score = 114 bits (126), Expect = 1e-23 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 2144409 ACCAGGGGGTTGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGCCGCAAGGCGACGT 2144468 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 2144469 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 2144504 >seq457 Length=62169 Score = 105 bits (116), Expect = 6e-21 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 47262 ACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 47321 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 47322 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 47357 >seq2 Length=6328565 Score = 105 bits (116), Expect = 6e-21 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 28848 ACCAGGGGGTGGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 28907 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 28908 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 28943 Score = 105 bits (116), Expect = 6e-21 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 5616256 ACCAGGGGGTGGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 5616197 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 5616196 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 5616161 Score = 105 bits (116), Expect = 6e-21 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 6276509 ACCAGGGGGTGGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 6276568 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 6276569 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 6276604 >seq1 Length=7344524 Score = 100 bits (110), Expect = 3e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| ||||||| || |||||| || ||||| Sbjct 3205565 AGGCCCAGGCGACTGTTTAGCAAAAACACAGGACTCTGCGAAATCGAAAGATGAAGTATA 3205506 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| |||| |||||||||||| |||||||||| Sbjct 3205505 GGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 3205473 Score = 100 bits (110), Expect = 3e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| ||||||| || |||||| || ||||| Sbjct 5227484 AGGCCCAGGCGACTGTTTAGCAAAAACACAGGACTCTGCGAAATCGAAAGATGAAGTATA 5227543 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| |||| |||||||||||| |||||||||| Sbjct 5227544 GGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 5227576 >seq318 Length=132058 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 48458 GGTCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 48517 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | ||| ||| ||||||||||||||||||||||||| || Sbjct 48518 AAGACAATCTATGGGGGCTGACGCCTGCCCGGTGCCGGAAGGTGAA 48563 >seq376 Length=97167 Score = 77.0 bits (84), Expect = 3e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||||| ||||||| || | ||| || |||||| || ||| Sbjct 72554 GCGACTGTTTATTAAAAACACAGGACTCTGCTAA-AGAAAAACTGATGTATAGAGTCTGA 72612 Query 128 CGCCTGCCCGGTGCCGG 144 | |||||||||||| || Sbjct 72613 CACCTGCCCGGTGCTGG 72629 >seq60 Length=599436 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| ||| || || | ||| |||||| ||| ||| Sbjct 38993 GCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTTGTAAGACAACGTATGGGGGCTGA 39052 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 39053 CGCCTGCCCAGTGCCGGAAGGTTAA 39077 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| ||| || || | ||| |||||| ||| ||| Sbjct 88756 GCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTTGTAAGACAACGTATGGGGGCTGA 88697 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 88696 CGCCTGCCCAGTGCCGGAAGGTTAA 88672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476796618892