Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq60 78.8 2e-12 seq19 73.4 7e-11 seq5 73.4 7e-11 seq4 73.4 7e-11 seq3 73.4 7e-11 >seq60 Length=599436 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || || |||| ||||| ||||| Sbjct 39827 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACC 39768 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 39767 CTTGGGACGTACTACCGCCCC---AGGATGCGATGAGCCGACATCGAGGTGCCAAACCTC 39711 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 39710 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 39656 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || || |||| ||||| ||||| Sbjct 87922 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACC 87981 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 87982 CTTGGGACGTACTACCGCCCC---AGGATGCGATGAGCCGACATCGAGGTGCCAAACCTC 88038 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 88039 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 88093 >seq19 Length=1029424 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 834131 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 834190 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| |||| ||| || | | ||| || ||||||||||||| | |||| | | Sbjct 834191 CTTGGGACCGGCTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 834247 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 834248 GCCGTCGATGTGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 834302 >seq5 Length=3486096 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| || ||||| | || Sbjct 695052 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 694993 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| ||| || | | ||| || ||||||||||||| | |||| | | Sbjct 694992 CTTGGGACCGACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 694936 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 694935 GCCGTCGATGTGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 694881 >seq4 Length=3599618 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 ||||||| |||| ||| |||||||||| ||| || ||| || ||||| | || Sbjct 2863209 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCGCTTTAACCGGCGAACAGCCGGACC 2863268 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 2863269 CTTGGGACC---TTCTCCAGCCCCAGGATGCGACGAGCCGACATCGAGGTGCCAAACTTC 2863325 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 | ||||| ||||||| ||||| || | |||| ||||||||| |||| ||||| Sbjct 2863326 ATCGTCGATATGAACTCTTGGATGAAATCAGCCTGTTATCCCTAAGGTACCTTTT 2863380 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 ||||||| |||| ||| |||||||||| ||| || ||| || ||||| | || Sbjct 3215649 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCGCTTTAACCGGCGAACAGCCGGACC 3215708 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 3215709 CTTGGGACC---TTCTCCAGCCCCAGGATGCGACGAGCCGACATCGAGGTGCCAAACTTC 3215765 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 | ||||| ||||||| ||||| || | |||| ||||||||| |||| ||||| Sbjct 3215766 ATCGTCGATATGAACTCTTGGATGAAATCAGCCTGTTATCCCTAAGGTACCTTTT 3215820 >seq3 Length=4400433 Score = 73.4 bits (80), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 10/183 (5%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| ||| |||||||||||||| || ||| | || ||||| Sbjct 2145248 ACCAAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGC 2145189 Query 107 CCAACGCTTACCGAATTCTGCTTCGG---TATGATAGGAAGAGCCGACATCGAAGGATCA 163 | ||| ||| | ||||||| | | ||| || ||||||||||||| | || Sbjct 2145188 CGAACCCTT---GGGACCTGCTTCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCA 2145132 Query 164 AA--AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 || | || ||||| |||| || ||||| || |||| |||||||| | ||| || Sbjct 2145131 AACGATGC--CGTCGATATGGACTCTTGGGCATCATCAGCCTGTTATCCCCGGAGTACCT 2145074 Query 222 TTT 224 ||| Sbjct 2145073 TTT 2145071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854393745792