Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1 199 4e-49 seq4 158 1e-36 seq3 143 3e-32 seq19 138 1e-30 seq457 136 4e-30 seq5 136 4e-30 seq2 136 4e-30 seq60 113 5e-23 seq318 104 3e-20 >seq1 Length=7344524 Score = 199 bits (220), Expect = 4e-49 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| | Sbjct 3205258 CGGGGTCTTTTCGTCCCGTTGCGGGTAATCGGCATCTTCACCGATACTTCAATTTCACCG 3205317 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 |||||| || ||||||| |||||||||||||||||||||||||||||| Sbjct 3205318 AGCTCATGGCCGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCC 3205377 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3205378 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 3205437 Score = 199 bits (220), Expect = 4e-49 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| | Sbjct 5227791 CGGGGTCTTTTCGTCCCGTTGCGGGTAATCGGCATCTTCACCGATACTTCAATTTCACCG 5227732 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 |||||| || ||||||| |||||||||||||||||||||||||||||| Sbjct 5227731 AGCTCATGGCCGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCC 5227672 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 5227671 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 5227612 >seq4 Length=3599618 Score = 158 bits (174), Expect = 1e-36 Identities = 122/149 (82%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||||| ||||||| |||||||||||||| | ||||||||||||||| Sbjct 2863748 GGGTCTTTCCGTCCTTCTGCGGGTAGGCGGCATCTTCACCGCCATTACAATTTCACTGAG 2863807 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||||||||||| | ||| |||||||||||||||||||||||||| Sbjct 2863808 CACCTGGTTGAGACAGCGCCCAACTCGTTTCACGATTCGTGCAGGTCGGAACTTACCCGA 2863867 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 2863868 CAAGGAATTTCGCTACCTTAGGACCGTTA 2863896 Score = 158 bits (174), Expect = 1e-36 Identities = 122/149 (82%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||||| ||||||| |||||||||||||| | ||||||||||||||| Sbjct 3216188 GGGTCTTTCCGTCCTTCTGCGGGTAGGCGGCATCTTCACCGCCATTACAATTTCACTGAG 3216247 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||||||||||| | ||| |||||||||||||||||||||||||| Sbjct 3216248 CACCTGGTTGAGACAGCGCCCAACTCGTTTCACGATTCGTGCAGGTCGGAACTTACCCGA 3216307 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 3216308 CAAGGAATTTCGCTACCTTAGGACCGTTA 3216336 >seq3 Length=4400433 Score = 143 bits (158), Expect = 3e-32 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||||||| | |||||||||| | ||| ||||||| ||| Sbjct 2144708 CGGGGTCTTTCCGTCTGACCGCGGGTACCCCGCATCTTCACGGGGACTTCAATTTCGCTG 2144649 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 2144648 AGTCGATGCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 2144589 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 2144588 GACAAGGAATTTCGCTACCTTAGGACCGTTA 2144558 >seq19 Length=1029424 Score = 138 bits (152), Expect = 1e-30 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||| || | |||||||||| | | | ||||||||||| Sbjct 834667 CGGGGTCTTTCCGTCTAGCCGCGGATACACCGCATCTTCACGGCGATTTCAATTTCACTG 834726 Query 83 AGCTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| | ||||||| ||| ||||||||||||||||||||||||| Sbjct 834727 AG-TCTCGGGTAGAGACAGCGCCCCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 834785 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 834786 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 834817 >seq457 Length=62169 Score = 136 bits (150), Expect = 4e-30 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 47561 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 47502 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 47501 AGTCTATGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 47442 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 47441 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 47382 >seq5 Length=3486096 Score = 136 bits (150), Expect = 4e-30 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||| | | ||||||| || | | | ||||||||||| Sbjct 694516 CGGGGTCTTTCCGTCTAGCCGCGGGAACACTGCATCTTAACAGCGATTTCAATTTCACTG 694457 Query 83 AGCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || | ||| ||||||| ||| ||||||||||||||||||||||||| Sbjct 694456 AG-TCTCTGGTGGAGACAGCGTGGCCGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 694398 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 694397 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 694338 Query 202 C 202 | Sbjct 694337 C 694337 >seq2 Length=6328565 Score = 136 bits (150), Expect = 4e-30 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 29147 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 29088 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 29087 AGTCTATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 29028 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 29027 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 28968 Score = 136 bits (150), Expect = 4e-30 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 5615957 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 5616016 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 5616017 AGTCTATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 5616076 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 5616077 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 5616136 Score = 136 bits (150), Expect = 4e-30 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 6276808 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 6276749 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 6276748 AGTCTATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 6276689 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 6276688 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 6276629 >seq60 Length=599436 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 39289 GGGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTATTTCACCGAG 39230 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 39229 -TCTCTCTCTGAGACAGTGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 39171 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 39170 ACAAGGAATTTCGCTACCTTAGGACCGTTA 39141 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 88460 GGGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTATTTCACCGAG 88519 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 88520 -TCTCTCTCTGAGACAGTGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 88578 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 88579 ACAAGGAATTTCGCTACCTTAGGACCGTTA 88608 >seq318 Length=132058 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | || | || |||||||||| || | | ||||||| ||| Sbjct 48782 GGGTCTTTCTGTCCAGGTGTAGGAAGTCCGCATCTTCACGGACATGTCTATTTCACCGAG 48723 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 48722 -TCTCTCTCTGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 48664 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 48663 ACAAGGAATTTCGCTACCTTAGGACCGTTA 48634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196119668