Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-24 seq2 104 3e-20 seq371 86.0 9e-15 seq19 75.2 2e-11 >seq6 Length=3173221 Score = 116 bits (128), Expect = 5e-24 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 60 CGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTC 119 ||| ||||| || ||||| | |||||||||| || || |||| ||||| || ||||| Sbjct 1068823 CGGGGCCGGGGCCTCTTCGATGACCTTCTGGTTCCGGCGCTGCATGGAGCAGTCCCGGTC 1068882 Query 120 GCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179 ||||||||| ||| || ||| || ||| | ||| || || ||||||||||||||||| Sbjct 1068883 GCCCAGGTGAATGCAGTTGCCGTGCATGTCAGCCAGAACCTGTACTTCCACGTGACGTGG 1068942 Query 180 GTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221 | |||| |||| || ||||| || |||||| |||||| Sbjct 1068943 GGCTTCCAGGAACTTCTCGAGGTACACGGTCGGGTCGCCGAA 1068984 Score = 73.4 bits (80), Expect = 6e-11 Identities = 107/150 (71%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 55 AGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCG 114 || || || |||||||||||||| | |||||||||| || ||||| |||||||| Sbjct 1139097 AGTCCGGGCGCCGGCGCTTCTTCAACCACCTTCTGGTTCCGGCGTTGGGCGGAGCAATCC 1139156 Query 115 CGGTCGCCCAGGTGGATGGCGTGGCCCTGGCC---GTCGGACAGTACTTGCACTTCCACG 171 || || |||||| | | | || || | ||| | || |||| ||||||||||||| Sbjct 1139157 CGCTCACCCAGGGCCAGGACCTGACCTTCGCCATTGCCGAACAG---TTGCACTTCCACG 1139213 Query 172 TGACGTGGGTTGGTCAGGTACTTTTCCAGG 201 || || | || || | | ||||||||| Sbjct 1139214 TGGCGCGCGTGTTCCACGAATTTTTCCAGG 1139243 Score = 73.4 bits (80), Expect = 6e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 ||||||||||| | || |||||||| || || || | |||||| || || ||||||||| Sbjct 1825061 GGCGCTTCTTCGACCACTTTCTGGTGCCGGCGCTGGACCGAGCAGTCTCGTTCGCCCAGG 1825120 Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGG 179 | || ||||| ||| || ||| | | || || | ||||||||| || || Sbjct 1825121 TAGACGGCGTTGCCGTGTTGGTCAGCGAACACCTGAATTTCCACGTGCCGGGG 1825173 >seq2 Length=6328565 Score = 104 bits (114), Expect = 3e-20 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 ||||| ||| | || || ||||| || ||||||||||| || || |||| ||||| || Sbjct 3358074 CAGGCTCGGGGAAGGGGCCTCTTCGAGAACCTTCTGGTGCCGGCGCTGCAAGGAGCAGTC 3358015 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| ||||||||||| | ||| | ||| | ||||||| ||| || || | ||| | ||| Sbjct 3358014 GCGTTCGCCCAGGTGCACGGCATTGCCTTTGCCGTCGCCCAGAACCTGAATTTCGATGTG 3357955 Query 174 ACGTGGGTTGGTCAGGTACTTTTCCAGGTA 203 || || ||| ||||| ||||||| ||| Sbjct 3357954 GCGCGGCTTGCCGAGGTATTTTTCCATGTA 3357925 >seq371 Length=98968 Score = 86.0 bits (94), Expect = 9e-15 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 || || ||||| | ||||||||||| || || |||||||| || || || |||||||| Sbjct 26312 GGGGCCTCTTCGAAAACCTTCTGGTGGCGGCGCTGCAGCGAACAGTCCCGTTCGCCCAGA 26253 Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTC 186 || | ||| |||||| |||||| | || || | || | ||| || ||| ||||| Sbjct 26252 TGCACCGCGCGGCCCTTGCCGTCACCGAAGACCTGGATCTCGATGTGGCGGGGGGTGGTC 26193 Query 187 AGGTACTTTTCCAGGTAGAC 206 ||||| || || | |||||| Sbjct 26192 AGGTATTTCTCGATGTAGAC 26173 >seq19 Length=1029424 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48 TTCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGA 107 |||| |||||| || ||||| ||||||||||| || |||||||| || || |||| || Sbjct 420156 TTCGCTCAGGCCGGGAGCCGGAGCTTCTTCCAGGACTTTCTGGTGGCGGCGCTGCACGGA 420097 Query 108 GCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTC 167 ||| || || ||| |||| | | | | | ||| | ||| | | || || | || Sbjct 420096 GCAGTCACGCTCGGCCAGATACACGCCCTTGCCATCCTTATCGCAGAAAACCTGAATCTC 420037 Query 168 CACGTGACGTGGGTTGGTCAGGTA 191 |||||| || || | ||||||||| Sbjct 420036 CACGTGCCGGGGTTGGGTCAGGTA 420013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735994780840