Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq6 538 1e-150 >seq6 Length=3173221 Score = 538 bits (596), Expect = 1e-150 Identities = 477/590 (81%), Gaps = 6/590 (1%) Strand=Plus/Minus Query 14 GCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAAACGGCTTGACGAA 73 || ||||| || |||| |||||| || |||||||| || ||||| ||||| |||||| Sbjct 1746935 GCGCGGGAGGTTGCCTG--TTTGGCCTTG-GAGGCGTTGGCGGAGAAGCGGCT-GACGAA 1746880 Query 74 GGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGACAGCAGTTGCTCG 133 | |||| |||| |||||||||||||| |||||| ||||||| ||||| ||||| Sbjct 1746879 CTGCT-GCAGTTCGGCAATCTGCGCCTTCTT-CTTGGCATTGTCCGCCAGCATGCGCTCG 1746822 Query 134 CGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAACAGGCGCAGCTCG 193 |||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1746821 CGGGCCTGGGTGGCGGCGGTCATGTACTCGTCGTAGTTGCCCGGGAACAGGCGTAGCTCG 1746762 Query 194 CCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAG 253 ||||||||||| || ||||| ||||| || |||||||||||||| || |||||||| || Sbjct 1746761 CCGTAGTCCAGATCCGCCATATGGGTGCAGACGCTGTTCAGGAAATGGCGGTCGTGGGAA 1746702 Query 254 ATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTG 313 ||||||||||| |||| || |||||| |||||||||||||| ||||||||| Sbjct 1746701 ATGATGATCATGGTGCTGTTGCGGGCCACCAGGATGTTTTCCAGCCAGCGAATGGTGTTG 1746642 Query 314 ATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCC 373 ||||||| ||||||||| || ||||| |||| ||| || || ||||||||||| || ||| Sbjct 1746641 ATGTCCAGGTGGTTGGTGGGCTCGTCCAGCAGCAGAACGTCCGGATCGGAAAAAAGGGCC 1746582 Query 374 TGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCATCGGACCGAAGTGC 433 |||||||||| || | ||| ||||||||||| | | | ||||| || ||| |||| Sbjct 1746581 TGGGCCAGCAGCACCCTCAGTTTCCAGCCCGGCGCGAGGGCACTCATTGGGCCGTCGTGC 1746522 Query 434 TGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGATTCGGCGGTGTAG 493 || |||||||| ||| |||| ||||||||||| ||||| ||||||||||| || || ||| Sbjct 1746521 TGTTCCAGCGGGATATCCAGGCCCAGCAGCAGTTCACCAGCACGGGATTCAGCCGTATAG 1746462 Query 494 CCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCCGTCTTCTTCGCTC 553 |||||||| || ||||||| |||||| || ||||| ||||||||||||||||| ||| Sbjct 1746461 CCGTCCATTTCCGCGAACTGCACTTCCAGGTCAGCCACCGCCATGCCGTCTTCTTCACTC 1746402 Query 554 ATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCCACAG 603 |||||||||| || || || | |||||||| ||||| ||||| || Sbjct 1746401 ATTTCCGGCAAGGAATAGATCCGGTCACGCTCTTTTTTGACGTTCCAGAG 1746352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881585796272