Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001377.1 Length=151 Score E Sequences producing significant alignments: (Bits) Value seq6 105 5e-21 seq375 75.2 9e-12 seq5 75.2 9e-12 seq2 75.2 9e-12 >seq6 Length=3173221 Score = 105 bits (116), Expect = 5e-21 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 39 CAGGTCGGCACTGACAACGTATTGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTA 98 |||||||||| |||||| || |||||||| |||| || ||||| ||||| ||||| | Sbjct 2372554 CAGGTCGGCAGTGACAAGGTGCTGCTTGGCTTGTCAGGTGGCGTCGACTCGTCGGTAACA 2372613 Query 99 GCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCGA 151 || || |||||||| | ||| ||||| || || |||||||||||||| || || Sbjct 2372614 GCTGCGCTGCTGCATAGGGCAATCGGTGATCAGCTGACCTGCGTGTTCGTGGA 2372666 >seq375 Length=97185 Score = 75.2 bits (82), Expect = 9e-12 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 68 CCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGA 127 ||| || |||||||||||| |||||| | ||| || ||| | || |||| ||||| || Sbjct 34864 CCTTTCTGGCGGCGTTGACAGCTCGGTCGCAGCAGCCCTGATCCATGAGGCAATCGGTGA 34923 Query 128 CCAACTGACCTGCGTGTTTGTCGA 151 ||| |||||||| |||||||| || Sbjct 34924 CCAGCTGACCTGTGTGTTTGTGGA 34947 >seq5 Length=3486096 Score = 75.2 bits (82), Expect = 9e-12 Identities = 106/149 (71%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 3 AAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTG 62 || |||| ||||||||| ||| |||||| | | | || || | |||||||| | Sbjct 1505508 AACATTGTTGAAGATGCGGTCGAGCAAGTGAGAGAGAAAGTAGGTGCAGACAACGTGCTT 1505567 Query 63 CTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATC 122 || ||| || || || || || || ||||| || || |||||| |||| |||||| Sbjct 1505568 CTCGGCTTGAGTGGTGGAGTCGATTCTTCGGTAGTGGCAGCACTGTTGCAACGAGCCATC 1505627 Query 123 GGCGACCAACTGACCTGCGTGTTTGTCGA 151 ||||| || || |||||||||||||| Sbjct 1505628 GGCGATCAGTTGGTTTGCGTGTTTGTCGA 1505656 >seq2 Length=6328565 Score = 75.2 bits (82), Expect = 9e-12 Identities = 103/143 (72%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTT---GGC 68 || ||||| || ||| || | |||| |||||||| |||||| | | || ||| Sbjct 2977703 GACGATGCAATTGCCAAAATCCGCGAACAGGTCGG---TGACAAGAAAGTCATTTGCGGC 2977759 Query 69 CTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGAC 128 |||||||||||||| ||| ||||||| |||| ||| | || | || ||||| || Sbjct 2977760 CTGTCCGGCGGCGTCGACAGTTCGGTTGCTGCGGTCCTGATTCATGAAGCGATCGGTGAT 2977819 Query 129 CAACTGACCTGCGTGTTTGTCGA 151 || || || ||||| |||||||| Sbjct 2977820 CAGCTCACTTGCGTTTTTGTCGA 2977842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383997276960