Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001436.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq6 129 6e-28 seq5 105 7e-21 >seq6 Length=3173221 Score = 129 bits (142), Expect = 6e-28 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 3 ACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCC 62 || ||||| || ||| || || || ||| ||| |||| || |||||||| | | Sbjct 1842905 ACTTTTTTACTGGCCCGCAGACGGCGCTGGGCATTGCTGATAAAGAGTTCCGCCAGCGTC 1842846 Query 63 AGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAG 122 | | || | ||||| ||||||||| || |||||||| ||||||||||| || ||| Sbjct 1842845 TCAGCGACATCGGTATGCTGGTTGAGCCAGAGACTGAAGGCATCCTTGACCACACCGGAG 1842786 Query 123 ACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGT 182 | || || || ||||| ||||| || |||||||| ||||||||||| ||||| || || Sbjct 1842785 ATGAAGGCGGCAGCCTCACGGGAAGAAAGGCGCTCTTTGGTCTGCCCTGAGAACTGTGGC 1842726 Query 183 TCCTGCATCTT 193 ||||||||||| Sbjct 1842725 TCCTGCATCTT 1842715 >seq5 Length=3486096 Score = 105 bits (116), Expect = 7e-21 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 78 TGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCC 137 |||| || | ||| || || || ||||||||||| | ||| |||| ||| | || || Sbjct 317240 TGCTGATTTAACCAGAGACTAAAAGCGTCCTTGACGATGCCGGAGATAAATCCGGCCGCT 317181 Query 138 TCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTT 193 ||||| |||||||||||||| ||||||||||||||||||||||| ||| ||| || Sbjct 317180 TCGCGCGACGACAGGCGCTCTTTGGTCTGCCCGGAGAATTGCGGGTCCGACATTTT 317125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534396210436