Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001603.1 Length=479 Score E Sequences producing significant alignments: (Bits) Value seq6 167 7e-39 >seq6 Length=3173221 Score = 167 bits (184), Expect = 7e-39 Identities = 318/457 (70%), Gaps = 26/457 (6%) Strand=Plus/Minus Query 9 TTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACATCCATT 68 |||||||| | || ||| |||| |||| |||| || | || |||| | |||||| Sbjct 2103210 TTGCCGCCAAGTATCGCGGCAAAGGCCAGTATGACCCCCAGCAAACTCAGGATATCCATC 2103151 Query 69 AG-AGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGG--CTGTAGATGGCGTCGG 125 || || || | || |||||| || ||||| ||||||||| | | | || |||| | Sbjct 2103150 AGCAGACAC-CTTCGACCAGACGCGGACCGATTTCGTCCAGGGACAGCACAT--CGTCAG 2103094 Query 126 CCAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTT--CGTC 183 ||| | |||||| | | ||||||||||||||||||||| || | || ||| | || Sbjct 2103093 TCAGTCCTGCCTTGGCAACGGCCATGGGCATGCCATAGATAACCGA--TGACTTTTCATC 2103036 Query 184 CTGGGCCCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACGGCCGTCGGC 243 ||||| |||||| | |||| |||||| | || || ||||| |||||| | Sbjct 2103035 CTGGGACCAGATGTCCGACCCGCTCTGCTTCATCATCCGGCACCCTTCCTTGCCGTCCGA 2102976 Query 244 GCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGGCC---G 300 |||||||| ||||||| | || ||| || | | | ||| ||| | |||| | Sbjct 2102975 GCCCATGC-CGGTGAGAATGAC-GCC-GAGCGTCTTGCCCGGGAAACTCCG-GGCCAGGG 2102920 Query 301 AACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGATTT 360 |||||||||| | ||| || || ||||||||||| || || || || || || ||||| Sbjct 2102919 AACCGAAGGTTACGTCGACACAGGGCTTGTAGTTGAGCCGCTCGTCGCCGGGGAGGATGC 2102860 Query 361 TGATCGCGCCACGGCCATCC---------ACCATCATCTGCTTGCCACCCGGGGCCAGCA 411 |||| | | | ||| || ||||||||||||||||||||||| ||||| | Sbjct 2102859 GGATCCTGGCCTGCCCACCCCGGTTCTCAACCATCATCTGCTTGCCACCCGGTGCCAGAA 2102800 Query 412 GCGCCAGGCCAGGGCGCAGGATGTCGCCATCCTCGGC 448 | || || || || |||| | ||||||||| |||| Sbjct 2102799 GAGCAAGTCCCGGCCGCAACACATCGCCATCCGCGGC 2102763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1430389529472