Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq6 212 1e-52 seq2 109 1e-21 seq408 107 4e-21 seq5 107 4e-21 >seq6 Length=3173221 Score = 212 bits (234), Expect = 1e-52 Identities = 286/393 (73%), Gaps = 9/393 (2%) Strand=Plus/Minus Query 8 CAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTTGATCCTG 67 ||||| ||||||||||| |||||||||||||| || || |||||||| | || || || Sbjct 2225896 CAGCAGTTCGCCGCCCACTTGGGTCCACGCCAGCCCGGTCACCTGACCAATTTCATTCTT 2225837 Query 68 CTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGGAGTCGGC 127 | |||||||||||||| ||||||| || ||| | ||| || || ||| Sbjct 2225836 TTCTTCGGCCAGGCCGTACTTGAATTTCTTGACCCCGGAGTAGTCTTCAAGCATGTCCTT 2225777 Query 128 CGTGACCTTCACCGAGAAGCGTTTTT-CCAG----CGCATGTTCCTTGACCGCCTTGCGG 182 ||||| |||| ||| || || | ||| | | || || ||| |||||||| Sbjct 2225776 CGTGAGAGTCAC--AGACGCCTTATCGCCACTCTCCACGTGGTCACGCACCACCTTGCGG 2225719 Query 183 CAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGG 242 ||||| |||||||||| |||||||||||||||||||||||| || ||||||||||||||| Sbjct 2225718 CAGATTTTCGCGATCTCGCGCTCCAGGCCACGCACACCGGCCTCACGGGTGTAGTAGCGG 2225659 Query 243 ACGATGTCGCGGATCGT-GCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGC 301 | | |||||| | || || || ||| | |||| |||| ||| || || || Sbjct 2225658 ATCAGGTCGCGCAGGGTATCCTCAGGCAGCTTC-AACTCGTCCTTGCGCAGCCCGTTTGC 2225600 Query 302 CGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTA 361 | |||||||||||| || ||| | || ||||||| ||||||||| |||||||| Sbjct 2225599 CTTGATCTGCTTGGGCAACAGATACCGCAGCGCAATGTTGACCTTCTCGTCCTCGGTGTA 2225540 Query 362 ACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 || || | || || | ||||||||||||||| Sbjct 2225539 TCCGGGGATACGGATGATTTCCATCCGGTCCAG 2225507 >seq2 Length=6328565 Score = 109 bits (120), Expect = 1e-21 Identities = 179/252 (71%), Gaps = 16/252 (6%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||| |||||||| ||||| || | |||||| |||||||| ||||| || || | Sbjct 3317986 CGATGGTGAGCAACTCACCGCCGACTTCGGTCCAGGCCAGGCCGGTGACAACGCCAACCT 3318045 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCG-CACGCCGAGGAAGTGCTCCAGG 119 |||| | | | ||||| ||| |||| || ||| ||| ||||| ||| ||| | Sbjct 3318046 GATCTTCCAGTTCGGCTTCGCCATAGC-GATACCGCGGCACACCGAGATAGTCCTCGA-- 3318102 Query 120 GAGTCGGCCGTGACCTTCACCGAGAAGCGTT---TTTC---CAGC-GCATGTTCCTTGAC 172 | || ||| |||||| || || || | || || | | |||| ||||||| Sbjct 3318103 ----CCACCTCAACCGTCACCGTGATGCTTTCCTTGTCGCTCATCAGGATGT-CCTTGAC 3318157 Query 173 CGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGT 232 |||||| ||| | |||| || | |||||| ||| ||||||||||||||||||||| Sbjct 3318158 CGCCTTACGGGCCAAGGTCGCCATTTCGCGCTCAAGGTTACGCACACCGGCTTCGCGGGT 3318217 Query 233 GTAGTAGCGGAC 244 |||| |||||| Sbjct 3318218 GTAGCGGCGGAC 3318229 >seq408 Length=81665 Score = 107 bits (118), Expect = 4e-21 Identities = 265/398 (67%), Gaps = 8/398 (2%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||| ||||| ||||||||| || ||| | || || || |||||| |||||| | Sbjct 809 CGATGGACAGCAGCTCGCCGCCGACAGAGGTATAGGCTAGCCCGGTGACCACACCGACCT 750 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 |||||| | |||| ||||| ||||||| | || |||||||||||| | | ||| Sbjct 749 GATCCTCCAGCTCCGCCAGACCGTAGCGATACTTCGCCACGCCGAGGAAATCGCCGAGGT 690 Query 121 AGTCGGCCGTGACCTTCAC-CGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTG 179 || | ||| |||||||| | | | |||| | ||| | | ||||||| Sbjct 689 TCTCAGGCGTCACCTTCACGCTTTCGGTCTCTTTCTTGACGATG-GAGGTCAGCGCCTTG 631 Query 180 CGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAG 239 ||| | || ||||||| || || ||| ||||| || || || ||||||||| | Sbjct 630 CGGGCCACTTTGGCGATCTCACGTTCGAGGTTCCGCACGCCCGCCTCACGGGTGTAGGTG 571 Query 240 CGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTT---CTTCAGGCCA 296 |||| ||| || || || || | | ||||| || |||| ||| || ||| Sbjct 570 CGGATGATCTCTGTGAGCGCTTCGTCGGTCAGTTCGAACT---CCTTGGCCTTGAGACCA 514 Query 297 TTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCG 356 | | | | ||| |||| |||| || ||||||| | | ||| ||||| ||| Sbjct 513 TGGTTCTTCACCTGTTTGGAAATCAGGTGCTGCTTGGCGATCTCGCGCTTTTCGTCCTCG 454 Query 357 GTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||| || | || |||| | |||||||||||||| Sbjct 453 GTGTAGCCGGAGAGCGGAATGATCTCCATCCGGTCCAG 416 >seq5 Length=3486096 Score = 107 bits (118), Expect = 4e-21 Identities = 268/401 (67%), Gaps = 11/401 (3%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||| ||||| | || ||||| ||||| ||||| || | ||||| |||||||| || | Sbjct 1546575 CGATCGTCAGGATTTCCCCGCCAACCTGAGTCCAGGCTAATCCAGTCACCTGACCAACCT 1546516 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | | || ||| || | ||||||||| ||||| ||||| ||| | | |||| Sbjct 1546515 GGTTATTCTCCTCCGCAACGCCGTAGCTAAATTTTTCTACGCCAAGGTATTCAACCAGAT 1546456 Query 121 AGTCGGCCGTGACCTTCACCGA-GAAGCGTTTTTC-CAGCGCATGTTCCT--TGACCGCC 176 || | | | ||| | | | || ||||| || ||| ||||| | | ||| | Sbjct 1546455 CATCCTGCTTAATCTTGATAGGCGCAGTTTTTTTGACATCGC-TGTTCTTCATCACCACT 1546397 Query 177 TTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAG 236 ||||| | | ||| || || | || || | || ||||||||||| ||| ||| Sbjct 1546396 TTGCGAGAAAGCTTGGCAATTTCCCGATCAAAATTCCGTACACCGGCTTCCTTGGTATAG 1546337 Query 237 TAGCGGACGATGTCGCGGATCGTGCCGACTTC---AAATTCGATCTCGCCCTTCTTCAGG 293 | || | |||| |||| || || ||| || ||| | |||| |||| |||| Sbjct 1546336 TGACGCAGAATGTTTCGGAGCG---CGTCTTGGGTAATTTCCAGCTCGTCCTTTTTCAAC 1546280 Query 294 CCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCT 353 ||||| || | ||||||||| | | || || |||||| | ||| || ||| Sbjct 1546279 CCATTTGCTTTGACTTGCTTGGGCACCAAATATTTATCGGCGATCGCTACCTTTTCATCT 1546220 Query 354 TCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||| ||||||||||| |||||||| ||||| || || || Sbjct 1546219 TCGGTATAACCCGGCAGACGAATCACCTCCATGCGATCGAG 1546179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158391520512