Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq6 347 3e-93 seq4 120 8e-25 >seq6 Length=3173221 Score = 347 bits (384), Expect = 3e-93 Identities = 321/407 (79%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||| ||||| | |||||| || || ||||| ||||| |||||||| |||| Sbjct 1920402 CGATCAGGAAAACTTCCCTGGCACCAGCACCGAGGGCGGATTCGCGGATGGCCTTGCGCT 1920343 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||||||| ||||||| ||||| || | ||| || | ||||| || | ||| | Sbjct 1920342 CTACCTGGGTAGACTTGCTGGGAACACACACCAGTACTCTCGGGCTCGGGGTAATGAAGC 1920283 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 |||| || || || |||| || |||| ||| ||||| |||||| || ||| || | Sbjct 1920282 TGTTCTCATGCACTTTGTGAATAAAGTGCTGGAGCATTTTCTCGGTTACCACGAAATCTG 1920223 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 | || |||||||||||||| || |||||||| | ||| ||||| |||||||||||||||| Sbjct 1920222 CAATTACGCCGTCTTTCATTGGGCGAATGGCGGTAATGTTGCCCGGTGTACGGCCGAGCA 1920163 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300 |||||||||| |||| |||||| || | || |||||||| | ||| ||||||| Sbjct 1920162 TGCGCTTGGCTTCGGCGCCGACAGCGGCAACCATTTTCTGAGAGTTGTTGGTGCGAATGG 1920103 Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360 |||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||||||| Sbjct 1920102 CCACTACCGAGGGCTCGTTCAGCACGATTCCGCGCTCACGCACGTAAATGAGGGTGTTGG 1920043 Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGT 407 | ||||||||||| ||||| ||||||||||| || ||||| || ||| Sbjct 1920042 CGGTGCCCAGGTCGATGGACAGATCGCTGGAGAAGATGCCTCGGAGT 1919996 >seq4 Length=3599618 Score = 120 bits (132), Expect = 8e-25 Identities = 266/398 (67%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||| ||| | ||||| | ||||||||| || |||||||||| ||| || |||| Sbjct 3445070 CGATGAGGTAAACTTCCCTGGCACCGGCCTGTTCCGCGGATTCACGGACGGCGCGGCGCT 3445011 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||| |||| | | || | | ||| || || || || ||| | || Sbjct 3445010 CGACCTCGGTGATGCCGGATGGGATGGCGATGAGAACGCGTGGATTGGAACGGCGGCCCT 3444951 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 ||||| ||||| |||||||||| | ||||| ||| || |||||| | Sbjct 3444950 TGTTT------ACCTTCTTGATGAAGTGGCGGAGCATGGCCTCCGTAACCTCGAAGTCAG 3444897 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||| || || || || | ||| || ||||| | |||||||| || || |||||||||| Sbjct 3444896 CGATGACCCCATCCTTGAGCGGGCGGATGGCGACGATATTGCCGGGGGTCCGGCCGAGCA 3444837 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300 |||||||||| ||| || ||||| | | |||| || | | || | || Sbjct 3444836 TGCGCTTGGCATCGTCTCCCACGGCGAGG--ACTTCGTTGGTGCC----GGATTTCACGG 3444783 Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360 | || || || ||||| |||||||| ||| | || |||| || |||||||| | Sbjct 3444782 CGACCACGGAAGGCTCGCGGAGGACGATGCCGTGGTCCTTTACGTTGATGAGGGTGTTCG 3444723 Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATG 398 | ||||| || ||||| | |||||||||||||||| Sbjct 3444722 CGGTGCCGAGATCAATTCCGATATCGCTGGAAAACATG 3444685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353590091648