Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001693.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value seq19 105 2e-20 seq6 104 9e-20 >seq19 Length=1029424 Score = 105 bits (116), Expect = 2e-20 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 228 CAGTATGCGAGTCGTTTATTTCGCCAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATG 287 |||||||| || ||| || || ||| |||| ||||| ||||| ||| || |||||| Sbjct 328031 CAGTATGCCAGCCGTAAGTTCCGTCAGAGGCTCTGGCGCTATCGAATGACACAAAGCATG 327972 Query 288 AGTCGCCGGGGAAATTGCTGGGACAATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAA 347 || || || || || ||||||||||| || || |||||| | ||||||| || ||||| Sbjct 327971 AGCCGACGTGGCAACTGCTGGGACAACGCACCGATGGAGAGGCTGTTCCGGAGTCTGAAA 327912 Query 348 ACGGAGTGGATACCGACCACGGGTTACCGAA 378 | || ||||||||| || ||| || |||| Sbjct 327911 TCTGAATGGATACCGGCCCTGGGATATCGAA 327881 >seq6 Length=3173221 Score = 104 bits (114), Expect = 9e-20 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 228 CAGTATGCGAGTCGTTTATTTCGCCAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATG 287 |||||||| || ||| || || ||| |||| ||||| ||||| ||| || |||||| Sbjct 1641523 CAGTATGCCAGCCGTAAGTTCCGTCAGAGGCTCTGGCGCTATCGAATGACACAAAGCATG 1641582 Query 288 AGTCGCCGGGGAAATTGCTGGGACAATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAA 347 || || || || || ||||||||||| || || |||||| | ||||||| ||| ||||| Sbjct 1641583 AGCCGACGTGGCAACTGCTGGGACAACGCACCGATGGAGAGGCTGTTCCGGAGCCTGAAA 1641642 Query 348 ACGGAGTGGATACCG 362 | || ||||||||| Sbjct 1641643 TCTGAATGGATACCG 1641657 Score = 96.9 bits (106), Expect = 1e-17 Identities = 199/297 (67%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 228 CAGTATGCGAGTCGTTTATTTCGCCAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATG 287 |||||||| || ||| || || ||| |||| ||||| ||||| ||| || |||||| Sbjct 1185217 CAGTATGCCAGCCGTAAGTTCCGTCAGAGGCTCTGGCGCTATCGAATGACACAAAGCATG 1185276 Query 288 AGTCGCCGGGGAAATTGCTGGGACAATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAA 347 || || || || || ||||||||||| || || |||||| | ||||||| || |||| Sbjct 1185277 AGCCGACGTGGCAACTGCTGGGACAACGCACCGATGGAGAGGCTGTTCCGGAGTCTGAA- 1185335 Query 348 ACGGAGTGGATACCGACCACGGGTTACCGAACGGCTCAAGAAGCCCAGCGCGATATCAGC 407 ||||||||| || ||| || |||| | || ||| ||| | | Sbjct 1185336 ------TGGATACCGGCCCTGGGATATCGAAATCTGCCTGAGGCCAGAAAAGATGTTGGT 1185389 Query 408 CAATTCTTAATGCATCGGTACAACTGGATTCGCCCCCATCGATTCAACGGTGGGCTGGCG 467 | | ||| |||||| || || || || |||||||| || | || Sbjct 1185390 GGCTATCTGATGGGCTACTACAACCGGCAGCGACCTCACGCATTCAACGACGGCATTTCG 1185449 Query 468 CCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTACAG 524 || | | ||| || ||||| ||||| | |||||||||||||||||||||||||| Sbjct 1185450 CCCGTTGCGGCTGAGGAAAACCTTAAAATACTGTCCGGGATTAGTTGACCACTACAG 1185506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1846386061988