Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq19 187 2e-45 seq5 174 1e-41 seq1 163 2e-38 seq2 149 5e-34 seq318 109 5e-22 seq3 102 7e-20 seq376 96.9 3e-18 seq60 87.8 1e-15 seq4 84.2 2e-14 >seq19 Length=1029424 Score = 187 bits (206), Expect = 2e-45 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| | ||| || |||| ||||||||||||| Sbjct 837707 TCGAGTTGCAGACTGCGATCCGGACTACGACGCGTTTTGTGAGATTGGCTCCCCCTCGCG 837766 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||| || ||||||||| | |||||||| ||||||| |||||| || ||||||||| Sbjct 837767 GGTTTGCAGCCCTCTGTGCGCGCCATTGTAGCACGTGTGTAGCCCTGGCCGTAAGGGCCA 837826 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||| ||||||||||||||||||||||||||||||||| Sbjct 837827 TGATGACCTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 837867 >seq5 Length=3486096 Score = 174 bits (192), Expect = 1e-41 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||||||||||| || ||| |||||||||||| | |||| Sbjct 685757 TCGAGTTGCAGACTCCAATCCGGACTACGAGACGTTTTAAGGGATTAGCTCCACATCGCT 685698 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | ||||| |||||||| | |||||||| ||||||| ||||| | ||||||||| Sbjct 685697 GCTTGGCAACCCTCTGTGCGCCCCATTGTAGCACGTGTGTAGCCCAGGTCGTAAGGGCCA 685638 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 685637 TGATGACTTGACGTCGTCCCCACCTTCCTCCGGTTTGTCAC 685597 >seq1 Length=7344524 Score = 163 bits (180), Expect = 2e-38 Identities = 126/150 (84%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||| |||||| ||||||| ||| || |||||||||||||| ||||| ||||||| Sbjct 3208076 TCGAGTTCCAGACTCCAATCCGAACTGGGACGCACTTTCTGGGATTGGCTCCACCTCGCG 3208135 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || ||||||||||| |||||||| ||||||| |||||| ||||| ||||| Sbjct 3208136 GCTTCGCTACCCTCTGTATGCGCCATTGTAGCACGTGTGTAGCCCTGGGCATAAAGGCCA 3208195 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| ||||||||||| |||||||||||||| Sbjct 3208196 TGATGACTTGACGTCGTCCCCACCTTCCTC 3208225 Score = 163 bits (180), Expect = 2e-38 Identities = 126/150 (84%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||| |||||| ||||||| ||| || |||||||||||||| ||||| ||||||| Sbjct 5224557 TCGAGTTCCAGACTCCAATCCGAACTGGGACGCACTTTCTGGGATTGGCTCCACCTCGCG 5224498 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || ||||||||||| |||||||| ||||||| |||||| ||||| ||||| Sbjct 5224497 GCTTCGCTACCCTCTGTATGCGCCATTGTAGCACGTGTGTAGCCCTGGGCATAAAGGCCA 5224438 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| ||||||||||| |||||||||||||| Sbjct 5224437 TGATGACTTGACGTCGTCCCCACCTTCCTC 5224408 >seq2 Length=6328565 Score = 149 bits (164), Expect = 5e-34 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGG-GATTAGCTCCCCCTCGC 59 |||||||||||| |||||||| ||| || || || ||| ||||||||||| ||||| Sbjct 5619196 TCGAGTTGCAGAGAACAATCCGAACT--GAGACGGCTTTTGGAGATTAGCTCCCTCTCGC 5619253 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | ||| || |||| |||| |||||||| ||||||| ||||| ||| |||||||| Sbjct 5619254 GAGTTCGCTGCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCC 5619313 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||||||||||||||||||||||||||||||| ||| || |||| Sbjct 5619314 ATGAGGACTTGACGTCATCCCCACCTTCCTCTCGGCTTATCAC 5619356 Score = 149 bits (164), Expect = 5e-34 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGG-GATTAGCTCCCCCTCGC 59 |||||||||||| |||||||| ||| || || || ||| ||||||||||| ||||| Sbjct 6273569 TCGAGTTGCAGAGAACAATCCGAACT--GAGACGGCTTTTGGAGATTAGCTCCCTCTCGC 6273512 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | ||| || |||| |||| |||||||| ||||||| ||||| ||| |||||||| Sbjct 6273511 GAGTTCGCTGCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCC 6273452 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||||||||||||||||||||||||||||||| ||| || |||| Sbjct 6273451 ATGAGGACTTGACGTCATCCCCACCTTCCTCTCGGCTTATCAC 6273409 Score = 86.0 bits (94), Expect = 5e-15 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||||||| ||||||| ||||| |||||||||||||| |||||||| | Sbjct 24525 TGTACTTCCCATTGTAGCACGTGTGTAGCCCAGTTCATAAGGGCCATGAAGACTTGACCT 24466 Query 135 CATCCCCACCTTCCTCC 151 ||||||||||||||||| Sbjct 24465 CATCCCCACCTTCCTCC 24449 >seq318 Length=132058 Score = 109 bits (120), Expect = 5e-22 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || | || |||||| |||||| Sbjct 100787 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGGTTTTTGAGGTTGGCTCCCTCTCGCGA 100728 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 |||||| | || ||| |||||||| ||||||| ||||| | |||||| ||| Sbjct 100727 GTTGGCATCTCTTTGTCCCGGCCATTGTAGCACGTGTGTAGCCCAGGGCGTAAGGGGCAT 100668 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 | |||||||||||||||| |||||||||||| || Sbjct 100667 GCTGACTTGACGTCATCCCTACCTTCCTCCGGCTT 100633 >seq3 Length=4400433 Score = 102 bits (112), Expect = 7e-20 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||||||| | |||||||||||||||||||||||||||||| Sbjct 2141680 CCATTGTAGCACGTGTGTAGCCCTACGCGTAAGGGCCATGAGGACTTGACGTCATCCCCG 2141621 Query 143 CCTTCCTCCGGTTT 156 ||||||||||| || Sbjct 2141620 CCTTCCTCCGGCTT 2141607 >seq376 Length=97167 Score = 96.9 bits (106), Expect = 3e-18 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| |||||||| ||| || || |||| ||||| ||||| || | Sbjct 93886 TCGAGTTGCAGAGAACAATCCGAACT--GAGACGGCTTTTATGGATTTGCTCCGGCTTTC 93829 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || |||| ||| |||||||| ||||||| ||||| |||||||||| | Sbjct 93828 ACCATTGCTTCCCTTTGTGACCGCCATTGTAACACGTGTGTAGCCCAGCCCATAAGGGTC 93769 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| |||||||||| |||| | ||||||||| || | |||| Sbjct 93768 ATGATGACTTGACGTGATCCTCTCCTTCCTCCAGTATATCAC 93727 >seq60 Length=599436 Score = 87.8 bits (96), Expect = 1e-15 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || |||||||| || | Sbjct 36651 CGAGTTGCAGCCTTCAATCCGAACTTAGA-ACAAGTTTAAAGATTAGCTTATTTTCACAA 36593 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || | | ||| | ||| |||| ||||||| ||||| ||||||| ||| Sbjct 36592 ATTCGCAACTTTTTGTCTTGTCCAATGTAGCACGTGTGTAGCCCAGGGTATAAGGGGCAT 36533 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||| || Sbjct 36532 GATGACTTGACGTCATCCTCACCTTCCTCCGGTTTGTAAC 36493 Score = 87.8 bits (96), Expect = 1e-15 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || |||||||| || | Sbjct 91098 CGAGTTGCAGCCTTCAATCCGAACTTAGA-ACAAGTTTAAAGATTAGCTTATTTTCACAA 91156 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || | | ||| | ||| |||| ||||||| ||||| ||||||| ||| Sbjct 91157 ATTCGCAACTTTTTGTCTTGTCCAATGTAGCACGTGTGTAGCCCAGGGTATAAGGGGCAT 91216 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||| || Sbjct 91217 GATGACTTGACGTCATCCTCACCTTCCTCCGGTTTGTAAC 91256 >seq4 Length=3599618 Score = 84.2 bits (92), Expect = 2e-14 Identities = 113/154 (73%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | || ||| |||| |||| |||||||| Sbjct 2866712 CGAGTTGCAGCCTCCAATCCGAACTGGGCC-CAGTTTTACAGATTTCCTCCACCTCGCGG 2866770 Query 62 GTTGGCGGCCCTCTGTATGTAC----CATTGTATGACGTGTGAAGCCCTACCCATAAGGG 117 | ||| ||| ||||| ||||||| ||||||| ||||||| | |||||| Sbjct 2866771 TAT--CGGT--TCTAATTGTACTGGGCATTGTAGTACGTGTGCAGCCCTAGGCGTAAGGG 2866826 Query 118 CCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 |||| ||| ||||||| ||||||||||||||| Sbjct 2866827 CCATACTGACCTGACGTCGTCCCCACCTTCCTCC 2866860 Score = 84.2 bits (92), Expect = 2e-14 Identities = 113/154 (73%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | || ||| |||| |||| |||||||| Sbjct 3219152 CGAGTTGCAGCCTCCAATCCGAACTGGGCC-CAGTTTTACAGATTTCCTCCACCTCGCGG 3219210 Query 62 GTTGGCGGCCCTCTGTATGTAC----CATTGTATGACGTGTGAAGCCCTACCCATAAGGG 117 | ||| ||| ||||| ||||||| ||||||| ||||||| | |||||| Sbjct 3219211 TAT--CGGT--TCTAATTGTACTGGGCATTGTAGTACGTGTGCAGCCCTAGGCGTAAGGG 3219266 Query 118 CCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 |||| ||| ||||||| ||||||||||||||| Sbjct 3219267 CCATACTGACCTGACGTCGTCCCCACCTTCCTCC 3219300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415997050040