Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq5 152 4e-35 seq19 134 1e-29 seq457 131 1e-28 seq2 122 6e-26 seq3 113 3e-23 seq318 107 1e-21 seq1 104 2e-20 seq376 91.5 1e-16 seq60 91.5 1e-16 seq4 80.6 2e-13 >seq5 Length=3486096 Score = 152 bits (168), Expect = 4e-35 Identities = 116/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 694888 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTA 694829 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| || ||| |||||||| |||||| ||| ||||||| ||||| Sbjct 694828 CTTTCGTACCTGCTCGAGATGTGACTCTCGCAGTCAAGCTGGCTTGTGCCATTACACTAA 694769 Query 121 CACTACGATTTCCGACC 137 | | ||||||||||| Sbjct 694768 CCGCATGATTTCCGACC 694752 >seq19 Length=1029424 Score = 134 bits (148), Expect = 1e-29 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 834295 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTA 834354 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | ||| ||||||| | |||| ||| ||||||| ||||| Sbjct 834355 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTTAAGCGGGCTTGTGCCATTACACTAA 834414 Query 121 CACTACGATTTCCGACC 137 | | ||| ||||||| Sbjct 834415 CCGCATGATGTCCGACC 834431 >seq457 Length=62169 Score = 131 bits (144), Expect = 1e-28 Identities = 114/139 (82%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 47933 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 47874 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| ||| ||| |||||||||||| Sbjct 47873 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 47814 Query 121 CACTAC-GATTTCCGACCG 138 || || |||||||||||| Sbjct 47813 -ACGACCGATTTCCGACCG 47796 >seq2 Length=6328565 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 29516 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGGCCGT 29457 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| ||| ||| |||||||||||| Sbjct 29456 CTTTCGACTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 29397 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 29396 -ACGAGCGATTTCCGACCG 29379 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 5615588 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGGCCGT 5615647 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| ||| ||| |||||||||||| Sbjct 5615648 CTTTCGACTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACT-C 5615706 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 5615707 AACGAGCGATTTCCGACCG 5615725 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 6277177 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGGCCGT 6277118 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| ||| ||| |||||||||||| Sbjct 6277117 CTTTCGACTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 6277058 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 6277057 -ACGAGCGATTTCCGACCG 6277040 >seq3 Length=4400433 Score = 113 bits (124), Expect = 3e-23 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 2145078 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGGACCACCGGATCACTATGACCGA 2145019 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || | ||| || ||| ||| ||| |||||||||||| | Sbjct 2145018 CTTTCGTCTCTGCTCGGTCCGTCGACCTCACAGTCAGGCAAGCTTATGCCATTGCACTCA 2144959 Query 120 TCACTACGATTTCCGACCG 138 || |||| |||||||| Sbjct 2144958 ACA-GCCGATGTCCGACCG 2144941 >seq318 Length=132058 Score = 107 bits (118), Expect = 1e-21 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCA-TTCATAGCCACCGGATCACTATGACCT 59 || |||||||||||||||||| |||||||||| | || || |||||||||| | || Sbjct 49156 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACGTGGTA-CCGTCGGATCACTAAGGCCG 49098 Query 60 GCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTA 119 |||||||| |||||| | |||| | ||| ||| |||||| | |||||||| ||||||| Sbjct 49097 GCTTTCGCCCCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACTC 49038 Query 120 TCACTACGATTTCCGACC 137 || |||||||| || Sbjct 49037 TCCGGCTGATTTCCGTCC 49020 >seq1 Length=7344524 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | ||||||||||||| |||| Sbjct 3204892 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTG 3204951 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTT 105 |||||||| ||| || | ||| | |||| || |||||||| ||| Sbjct 3204952 CTTTCGCACCTGATCGATCTGTCGATCTCCCAGTCAAGCACCCTT 3204996 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | ||||||||||||| |||| Sbjct 5228157 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTG 5228098 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTT 105 |||||||| ||| || | ||| | |||| || |||||||| ||| Sbjct 5228097 CTTTCGCACCTGATCGATCTGTCGATCTCCCAGTCAAGCACCCTT 5228053 >seq376 Length=97167 Score = 91.5 bits (100), Expect = 1e-16 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||| ||||||||||||| ||||||||| || || |||| |||||||| || Sbjct 75113 TACCTTTGATCCGTTGAGCGAGAGCCCTTCCACTCGGTGCTCCCGGGTCACTATGGCCGA 75054 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| |||||| | |||| |||| || ||| ||| |||||| ||||| | || Sbjct 75053 CTTTCGTCCCTGCTCGACTTGTAAGTCTCACAGTCAGGCAGACTTTTACCATTACGCTCT 74994 Query 120 TCACTACGATTTCCGAC 136 |||| || |||||||| Sbjct 74993 TCACCCCG-TTTCCGAC 74978 >seq60 Length=599436 Score = 91.5 bits (100), Expect = 1e-16 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||| || | | ||||| ||| | || |||||||| |||| Sbjct 39663 TAACTTTTATCCGTTGAGTGACGACTTTTCCACTCAATATCGCCAGATCACTAAGACCGA 39604 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||| || | |||| | |||| || |||||| |||||||| ||||||| | Sbjct 39603 CTTTCGTCTCTGTTCGACTTGTAGGTCTCACAGTCAAGCTTCCTTTTGCCTTTGCACTCT 39544 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||| ||||| Sbjct 39543 -ACGATCGATTTCTGACCG 39526 Score = 91.5 bits (100), Expect = 1e-16 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||| || | | ||||| ||| | || |||||||| |||| Sbjct 88086 TAACTTTTATCCGTTGAGTGACGACTTTTCCACTCAATATCGCCAGATCACTAAGACCGA 88145 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||| || | |||| | |||| || |||||| |||||||| ||||||| | Sbjct 88146 CTTTCGTCTCTGTTCGACTTGTAGGTCTCACAGTCAAGCTTCCTTTTGCCTTTGCACTCT 88205 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||| ||||| Sbjct 88206 -ACGATCGATTTCTGACCG 88223 >seq4 Length=3599618 Score = 80.6 bits (88), Expect = 2e-13 Identities = 91/120 (76%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTC--CATTCATAGCCACCGGATCACTATGACC 58 ||||||||||||||||||||| ||| ||| ||||| | || |||||||||| | || Sbjct 2863373 TACCTTTTATCCGTTGAGCGACGGCAATTCCACATTC--AACCGCCGGATCACTTAGGCC 2863430 Query 59 TGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 | |||||| |||||||| | |||| | |||| || | | || || |||| |||||| Sbjct 2863431 TACTTTCGTATCTGCTCGACTTGTAGGTCTCACAGTTAGGCGGGTTTATGCCTATGCACT 2863490 Score = 80.6 bits (88), Expect = 2e-13 Identities = 91/120 (76%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTC--CATTCATAGCCACCGGATCACTATGACC 58 ||||||||||||||||||||| ||| ||| ||||| | || |||||||||| | || Sbjct 3215813 TACCTTTTATCCGTTGAGCGACGGCAATTCCACATTC--AACCGCCGGATCACTTAGGCC 3215870 Query 59 TGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 | |||||| |||||||| | |||| | |||| || | | || || |||| |||||| Sbjct 3215871 TACTTTCGTATCTGCTCGACTTGTAGGTCTCACAGTTAGGCGGGTTTATGCCTATGCACT 3215930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351997584400