Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq5 205 9e-51 seq19 192 6e-47 seq3 150 2e-34 seq457 147 2e-33 seq2 138 1e-30 seq1 104 2e-20 seq4 86.0 6e-15 >seq5 Length=3486096 Score = 205 bits (226), Expect = 9e-51 Identities = 139/156 (89%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| Sbjct 694876 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTACTTTCGTACCTG 694817 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||||| || |||||||||||||||| |||| ||||||| |||||||| || ||| || Sbjct 694816 CTCGAGATGTGACTCTCGCAGTCAAGCTGGCTTGTGCCATTACACTAACCGCATGATTTC 694757 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| || ||||| |||||||||||||||||||| Sbjct 694756 CGACCATGCTTAGCCAACCTTCGTGCTCCTCCGTTA 694721 >seq19 Length=1029424 Score = 192 bits (212), Expect = 6e-47 Identities = 136/156 (87%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| Sbjct 834307 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTACTTTCGTACCTG 834366 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||| |||| |||| ||||||| |||||||| || |||||| Sbjct 834367 CTCGACGTGTCTGTCTCGCAGTTAAGCGGGCTTGTGCCATTACACTAACCGCATGATGTC 834426 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| || ||||| ||||| |||||||||||||| Sbjct 834427 CGACCATGCTTAGCCCACCTTTGTGCTCCTCCGTTA 834462 >seq3 Length=4400433 Score = 150 bits (166), Expect = 2e-34 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | |||||||||||||||||||| |||||| ||| Sbjct 2145066 GTTGAGCGATGGCCCTTCCACTCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 2145007 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||| ||||| ||| |||||| || |||||||||||||||||| | | ||||||| Sbjct 2145006 CTCGGTCCGTCGACCTCACAGTCAGGCAAGCTTATGCCATTGCACTCAACAGCCGATGTC 2144947 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | |||| ||| ||| || ||||||||| Sbjct 2144946 CGACCGGCTTGAGCTTACCATCGCGCGCCTCCGTTA 2144911 >seq457 Length=62169 Score = 147 bits (162), Expect = 2e-33 Identities = 126/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 47921 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 47862 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | | |||| || Sbjct 47861 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACGACCGATTTC 47802 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||||||| || ||||||||| Sbjct 47801 CGACCGGTCTGAGCCTACCTTCGCGCGCCTCCGTTA 47766 >seq2 Length=6328565 Score = 138 bits (152), Expect = 1e-30 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | ||||||||||||||||| || |||||| ||| Sbjct 29504 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGGCCGTCTTTCGACTCTG 29445 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | | |||| || Sbjct 29444 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACGAGCGATTTC 29385 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||||||| || ||||||||| Sbjct 29384 CGACCGCTCTGAGCCCACCTTCGCGCGCCTCCGTTA 29349 Score = 138 bits (152), Expect = 1e-30 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | ||||||||||||||||| || |||||| ||| Sbjct 5615600 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGGCCGTCTTTCGACTCTG 5615659 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | | |||| || Sbjct 5615660 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACGAGCGATTTC 5615719 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||||||| || ||||||||| Sbjct 5615720 CGACCGCTCTGAGCCCACCTTCGCGCGCCTCCGTTA 5615755 Score = 138 bits (152), Expect = 1e-30 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | ||||||||||||||||| || |||||| ||| Sbjct 6277165 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGGCCGTCTTTCGACTCTG 6277106 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | | |||| || Sbjct 6277105 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACGAGCGATTTC 6277046 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||||||| || ||||||||| Sbjct 6277045 CGACCGCTCTGAGCCCACCTTCGCGCGCCTCCGTTA 6277010 >seq1 Length=7344524 Score = 104 bits (114), Expect = 2e-20 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||| |||||||||||||||| Sbjct 3204905 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTGCTTTCGCACCTGA 3204964 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| | ||| |||| ||||||||| ||||| | | | || | || ||| || Sbjct 3204965 TCGATCTGTCGATCTCCCAGTCAAGCACCCTTATACTCATACGCTCTTCGCATGATTACC 3205024 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| || | || ||||| | | ||||||||| Sbjct 3205025 AACCATGCTGAGGGTACCTTTGCGAGCCTCCGTTA 3205059 Score = 104 bits (114), Expect = 2e-20 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||| |||||||||||||||| Sbjct 5228144 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTGCTTTCGCACCTGA 5228085 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| | ||| |||| ||||||||| ||||| | | | || | || ||| || Sbjct 5228084 TCGATCTGTCGATCTCCCAGTCAAGCACCCTTATACTCATACGCTCTTCGCATGATTACC 5228025 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| || | || ||||| | | ||||||||| Sbjct 5228024 AACCATGCTGAGGGTACCTTTGCGAGCCTCCGTTA 5227990 >seq4 Length=3599618 Score = 86.0 bits (94), Expect = 6e-15 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCA--TTCAGAACCACCGGATCACTATGACCTGCTTTCGCACC 81 ||||||||| ||| ||||| |||| ||| |||||||||| | ||| |||||| | | Sbjct 2863385 GTTGAGCGACGGCAATTCCACATTCA--ACCGCCGGATCACTTAGGCCTACTTTCGTATC 2863442 Query 82 TGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATG 141 ||||||| || |||| |||| | || | ||||||| |||||| | |||| | Sbjct 2863443 TGCTCGACTTGTAGGTCTCACAGTTAGGCGGGTTTATGCCTATGCACTCGACACACGGTT 2863502 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||||| | | | ||||||| |||||||||||| Sbjct 2863503 ACAAACCGTGCTGAACCCACCTTCGCGCTCCTCCGTTA 2863540 Score = 86.0 bits (94), Expect = 6e-15 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCA--TTCAGAACCACCGGATCACTATGACCTGCTTTCGCACC 81 ||||||||| ||| ||||| |||| ||| |||||||||| | ||| |||||| | | Sbjct 3215825 GTTGAGCGACGGCAATTCCACATTCA--ACCGCCGGATCACTTAGGCCTACTTTCGTATC 3215882 Query 82 TGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATG 141 ||||||| || |||| |||| | || | ||||||| |||||| | |||| | Sbjct 3215883 TGCTCGACTTGTAGGTCTCACAGTTAGGCGGGTTTATGCCTATGCACTCGACACACGGTT 3215942 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||||| | | | ||||||| |||||||||||| Sbjct 3215943 ACAAACCGTGCTGAACCCACCTTCGCGCTCCTCCGTTA 3215980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473596641584