Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq6 145 1e-32 >seq6 Length=3173221 Score = 145 bits (160), Expect = 1e-32 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 108 ACGGCCAGGACGGCCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGA 167 ||||||| || ||| | ||| ||||||||||||||| | |||| |||| ||| | | Sbjct 2093214 ACGGCCACGAGGGCGGCGACGCGGCCGGTAAGGTGATCGAATCCTTTGGTGCGGTACTCA 2093273 Query 168 TCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTG 227 |||| || ||||||| || ||| | ||||| |||||||| || |||||||||||||| Sbjct 2093274 TCGGTGGCAACTACGCCGTGGGTCTGGTGGTCTTCGCGATTCTTATGATCATCAACTTCC 2093333 Query 228 TGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 ||||||| || ||||| ||||| ||| | ||||| ||||| || || || ||||| Sbjct 2093334 TGGTGGTCACAAAGGGTGCCGGCCGGGTCTCCGAAGTGAGTGCCCGTTTCACCCT 2093388 Score = 100 bits (110), Expect = 5e-19 Identities = 120/162 (74%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60 |||||| ||||||| |||| || || ||||| ||| | |||| |||||| || || Sbjct 2093050 TACGCCCTGCGGCCCATGGAGTTTGCTTCTTTCCCCACGG-TACTGCTGGTGGCCACGCT 2093108 Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120 ||| |||||||| ||||||| || || || ||| | || || | ||||||| || || Sbjct 2093109 GCTGCGTCTGGCCCTGAACGTGGCGTCTACCCGGATCGTTCTGTTGAACGGCCACGAGGG 2093168 Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGT 162 | | ||| ||||||||||||||| | |||| |||| ||| Sbjct 2093169 CGGCGACGCGGCCGGTAAGGTGATCGAATCCTTTGGTGCGGT 2093210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809594258924