Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq19 109 9e-22 seq2 89.7 9e-16 seq441 77.0 5e-12 seq4 73.4 7e-11 seq1 73.4 7e-11 >seq19 Length=1029424 Score = 109 bits (120), Expect = 9e-22 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 93 ACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTT 152 || ||||| || ||||| | | || | || || || |||| ||||||| || ||||| Sbjct 639126 ACGGCAAGAAACGCTTCCT-GAGGCACCTCGACATTACCCAGCTGCTTCATACGCTTTTT 639184 Query 153 ACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTT 212 ||| | || ||||||| ||||| || ||| ||||| |||||||| ||||| || || Sbjct 639185 ACCTTCTTTCTGCTTCTGCAGCAGTTTCTTCTTCCGGCTGACGTCACCACCGTAACACTT 639244 Query 213 GGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAAT 272 ||| ||||||||| | || |||||||| | | ||||| | | ||| ||| || Sbjct 639245 GGCGGTTACGTTCTTGCGCAGCGCCTTGACCGTGACCCGCGACACCACCTGATTGCCGAT 639304 Query 273 GGCGGCCTGGATCGCGACGTCG 294 ||||||||| || || | |||| Sbjct 639305 GGCGGCCTGAATGGCAATGTCG 639326 >seq2 Length=6328565 Score = 89.7 bits (98), Expect = 9e-16 Identities = 136/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCCCA-CTCGCTTCATGCGTTTTTTACCGGCC 159 |||||| || | | ||| |||| || ||||| | || || ||| |||||||| ||| Sbjct 850565 GAAGGCATCCTGGGGGA-TTTCGACCTTGCCGAACTGGCG-CATCTTCTTTTTACCCGCC 850622 Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219 || ||||| || || ||||||||||||||| | |||| || ||||| || ||||| Sbjct 850623 TTCTGCTTTTCCAGAAGCTTGCGCTTACGGGTGGCGTCGCCACCGTAACACTTGGCGGTC 850682 Query 220 ACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCC 279 |||| ||| | || || || || || || || | | | ||||||||||| ||| Sbjct 850683 ACGTCCTTGCGCAGGGCAGCGATGGTCTCGCGGGCGATCACCCGGCCGCCAATGGCCGCC 850742 Query 280 TGGATCGCGA 289 ||||||| || Sbjct 850743 TGGATCGGGA 850752 >seq441 Length=70124 Score = 77.0 bits (84), Expect = 5e-12 Identities = 108/149 (72%), Gaps = 12/149 (8%) Strand=Plus/Minus Query 147 TTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTA 206 ||| |||||||| |||||||| || | ||||||||||| ||| | | || |||||||| Sbjct 44119 TTTCTTACCGGCTTTTTGCTTGTCCAAGAGCTTGCGCTTCCGGGTGGCATCGCCGCCGTA 44060 Query 207 GCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGA---GGTC---CGCGCAATGAT 260 |||||| || |||| ||| | || ||| |||| |||| || || |||| Sbjct 44059 GCATTTCGCGGTCACGTCCTT-----GCGCATTG-CGGAAAGGGTCTCGCGGGCGATGAC 44006 Query 261 CTGCCCGCCAATGGCGGCCTGGATCGCGA 289 || ||||| ||||| ||||| |||| || Sbjct 44005 CTTGCCGCCGATGGCCGCCTGAATCGGGA 43977 >seq4 Length=3599618 Score = 73.4 bits (80), Expect = 7e-11 Identities = 100/140 (71%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 TTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCAT 210 ||||| ||||| |||||||| || || || ||||| ||| | ||||| ||||||||| Sbjct 83372 TTACCCGCCTTCTGCTTCTCGAGAAGTTTCCGCTTCCGGGAAATATCACCACCGTAGCAT 83431 Query 211 TTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCA 270 || ||| ||||| || | | || || || ||| |||| ||||| || || Sbjct 83432 TTTGCCGTGACGTTTTTCCGCATCGCGGAGATCGATTCCCGGGCAACGATCTTGCCACCC 83491 Query 271 ATGGCGGCCTGGATCGCGAC 290 | ||| ||||||||||| || Sbjct 83492 ACGGCAGCCTGGATCGCCAC 83511 >seq1 Length=7344524 Score = 73.4 bits (80), Expect = 7e-11 Identities = 100/140 (71%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 148 TTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAG 207 || ||||| |||||||||||||| |||||||| |||||||| | | ||||| || || Sbjct 1694277 TTCTTACCTGCCTTTTGCTTCTCCAGCAGCTTACGCTTACGCGTGATATCACCACCATAA 1694336 Query 208 CATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCG 267 ||||| || ||| | ||| | ||||| | || | |||||||||| || Sbjct 1694337 CATTTAGCGGTTACATCCTTACGAAGAGCGGATAGCGACTCTCTGGCAATGATCTTTGCG 1694396 Query 268 CCAATGGCGGCCTGGATCGC 287 ||||| || ||||| || || Sbjct 1694397 CCAATAGCCGCCTGAATAGC 1694416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838393862912