Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq182 129 1e-27 seq2 104 5e-20 seq5 87.8 4e-15 seq4 80.6 6e-13 >seq182 Length=269236 Score = 129 bits (142), Expect = 1e-27 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 155 TTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATC 214 ||||| || || | | ||||||||| ||||| || || || ||||||| || || | Sbjct 39097 TTCCACCAGCCGCGACGTGTTCTCGGCCCGCTCGAGATAGCGGTACATCCAGTAGAGGCC 39038 Query 215 TGCAGCTGTTCTACGCAGCATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCG 274 || ||| | | ||||| |||| |||||| ||||||||||||||||| || || Sbjct 39037 GTTTGCCGTTTTTCCTAGCAT--TCAGTCCTCCAATACCCAGGTGTCCTTGGTGCCGCCC 38980 Query 275 CCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCG 334 || || || |||||||| ||||| || |||| |||||||||||||||||||| || ||| Sbjct 38979 CCCTGAGAGGAGTTGACCACCAGTGACCCTTTCTTCAGCGCCACGCGGGTCAGCCCGCCG 38920 Query 335 GGC 337 ||| Sbjct 38919 GGC 38917 >seq2 Length=6328565 Score = 104 bits (114), Expect = 5e-20 Identities = 131/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 152 GACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAG 211 |||||||| | |||| | ||||| |||||||| |||| || |||||||| |||| Sbjct 3459743 GACTTCCAAAAGCCGTGTGATGTTCTGCGCGCGCTCATGGTAGCGGGACATCCAGAACAG 3459684 Query 212 ATCTGCAGCTGTTCTACGCAGCATAC-----TCAGCCCTCCACCACCCAGGTGTCCTTGG 266 | || ||||| | ||||| |||| |||||| |||||||||||||||| Sbjct 3459683 TGACGAGGCGGTTCTTCCGAGCATCTGTTGTTCAGTCCTCCAGAACCCAGGTGTCCTTGG 3459624 Query 267 TTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCA 326 | || ||||| || ||||||||||| |||||||||| ||||| || || || |||| Sbjct 3459623 TGCCGCCGCCCTGACTGGAGTTGACGACAAGCGAGCCTTTCTTCAATGCAACCCGTGTCA 3459564 >seq5 Length=3486096 Score = 87.8 bits (96), Expect = 4e-15 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 168 GCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTA 227 |||| | ||| ||||||||||| || || | ||||||||| || | | || ||| Sbjct 587228 GCCATGCCCTCCGCGCGCTCCAGATATCGGGCCATCCAATAGAGGCGTTCGGCAACGCTA 587169 Query 228 CGCAGCATACTCAGC------CCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCG 281 | ||||| |||| | |||| | ||||||||||||||| | || || || || | Sbjct 587168 CTGAGCATGCTCATCGGCTTCCCTCAATCACCCAGGTGTCCTTACTGCCGCCACCCTGAG 587109 Query 282 ACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336 | || || ||||||| |||||| || || || || || || ||||| || || || Sbjct 587108 AGGAATTAACGACCAACGAGCCCTCTTTTAGTGCTACCCGCGTCAAACCGCCAGG 587054 >seq4 Length=3599618 Score = 80.6 bits (88), Expect = 6e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 251 ACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTC 310 ||||||||||| ||| | || ||||| || || ||||| || || |||||||||| || Sbjct 139486 ACCCAGGTGTCTTTGCTGCCGCCGCCCTGGGATGAGTTCACAACGAGCGAGCCTTTGTTG 139427 Query 311 AGCGCCACGCGGGTCAAGCCACCGGGCAC 339 || ||||||||||| | ||| ||||| || Sbjct 139426 AGTGCCACGCGGGTGAGGCCGCCGGGGAC 139398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119991801600