Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq638 176 9e-42 seq176 104 4e-20 >seq638 Length=20530 Score = 176 bits (194), Expect = 9e-42 Identities = 159/196 (81%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA-CCT 193 ||| |||||| ||||||||||||||||||||||||| | ||||||||| | ||| Sbjct 4797 CCTCAGATGTCCTGGGCCGCACGCGCGCTACACTGATGCATGCAACGAGTTTTTTTTCCT 4856 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAAC-TCTGTCGTGCTGGGGATAGAGCATTGCA 252 || || ||| | ||||||||| ||| ||| | ||||| | |||||||| |||| || Sbjct 4857 GGGTCGAGAGGCCCGGGTAATCT-GTTGAACGTGCATCGTGATAGGGATAGATCATTTCA 4915 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| |||| |||||||||| |||||||| |||| ||||||||| ||| |||||||| Sbjct 4916 ATTGTTGATCTTAAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCATTGATTAC 4975 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||| ||||| Sbjct 4976 GTCCCTGCCCCTTGTA 4991 >seq176 Length=273811 Score = 104 bits (114), Expect = 4e-20 Identities = 83/99 (84%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA-GATGTTCTGGGCCGCACGCGC 160 |||||||| | |||||||||||| | |||||||||||| ||||| ||||||||||||||| Sbjct 157981 TGGAAGTTGGGGGCAATAACAGGCCCGTGATGCCCTTAAGATGTCCTGGGCCGCACGCGC 158040 Query 161 GCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||| | ||||| |||| | | || ||||| Sbjct 158041 GCTACACTGATGCATCCAACTTGTTCTTTATCTCGGCCG 158079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947193066496