Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq3 188 2e-43 seq5 152 1e-32 seq19 149 2e-31 seq201 129 2e-25 seq562 122 2e-23 >seq3 Length=4400433 Score = 188 bits (208), Expect = 2e-43 Identities = 374/554 (68%), Gaps = 0/554 (0%) Strand=Plus/Plus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGAC 37711 ||||| |||||| | |||||| | ||||||| | ||||||||||| ||| | ||| Sbjct 1995026 ATGAAGCAATATCTCGACTTGTTAGAAGACATTCTCGAAAACGGCGTAGAACGCGGCGAC 1995085 Query 37712 CGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGAT 37771 || || || |||||||| ||||| || || || | || ||| || | || Sbjct 1995086 CGCACCGGGACAGGCACGCTCGGCGTGTTTGGACGACAAATGCGGTTCGACCTGAGTGAG 1995145 Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 ||||||| ||| |||| || || ||||||||| | || || |||||| ||||| | Sbjct 1995146 CGATTTCCACTCCTGACCACTAAGAAATTGCATTTGCGGTCGATCATTGTCGAACTCTTA 1995205 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 ||||| || |||||||| || || |||| |||||||| || | ||||||| Sbjct 1995206 TGGTTCCTACGCGGCGATACAAATGTGCGCTGGTTGCAGGACCGCAAAGTTAAGATTTGG 1995265 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 || |||||||| ||||| || || |||||||| ||| |||||||| ||||||||| Sbjct 1995266 GACGAGTGGGCTGACGAGAATGGTGATCTCGGGCCGGTTTACGGCAAGCAATGGCGTAGC 1995325 Query 37952 TGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAA 38011 ||| || | || || |||||||||||| |||||| |||| || ||| Sbjct 1995326 TGGGCGGCCCCGGATGGTCGGGTCATCGACCAGATTCAATGGGTGCTCGACGAAATCCGC 1995385 Query 38012 CGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAG 38071 | ||||| | || ||||| || |||| || ||||| || || | || Sbjct 1995386 AGCAATCCAAACTCCCGCCGTATGGTGGTCTCAGCCTGGAACCCCGCTGATGTCCCTGAT 1995445 Query 38072 ATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCA 38131 ||| ||||||||| ||||| | | || || ||| ||||| | || || || Sbjct 1995446 ATGGCGCTGCCGCCCTGTCACTGCCTGTTCCAATTCAATGTCATGGATGGGCGTCTGAAC 1995505 Query 38132 TGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGC 38191 ||| | | |||||||| | |||| || | || ||||||||||||||||| Sbjct 1995506 TGCCAGCTTTATCAGCGCTCGGCCGATATTTTCCTCGGCGTGCCGTTTAACATCGCGTCA 1995565 Query 38192 TACGCGCTGTTGAC 38205 || ||||| ||||| Sbjct 1995566 TATGCGCTTTTGAC 1995579 >seq5 Length=3486096 Score = 152 bits (168), Expect = 1e-32 Identities = 275/402 (68%), Gaps = 0/402 (0%) Strand=Plus/Plus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGAC 37711 ||||| || |||||||| || |||| |||| | || | || || | ||||||||| Sbjct 3432908 ATGAAGCAGTATTTAGATCTGATGCAGCACATTCTCGATGAAGGTGTGCATAAAGAAGAC 3432967 Query 37712 CGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGAT 37771 ||||| ||| || ||||| ||||| ||| ||| | || || | | | Sbjct 3432968 CGAACCGGCACAGGGACGCTCAGCGTGTTTGGCTATCAGATGCGTTTTGATCTGGCTCAG 3433027 Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 || ||||| | || || || ||||| | ||| ||||||| || ||| |||| |||||| Sbjct 3433028 GGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCCGCTCTATTATTCATGAGCTGCTT 3433087 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 |||||| | | ||| || || || ||| ||| | || |||||||| | ||||||| Sbjct 3433088 TGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGAACGATAATGGCGTCAAGATTTGG 3433147 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 ||||| ||||| ||| | || || || |||||| | || || | ||| ||||| || Sbjct 3433148 GATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGGTATATGGGGAGCAGTGGCGATCC 3433207 Query 37952 TGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAA 38011 ||||| || || ||||| ||| || |||||||| || | || | | || ||| Sbjct 3433208 TGGAAAGGTGCCGACGGCCAAATTATTGACCAGATTACAGATCTGGTGGGGCAAATTAAA 3433267 Query 38012 CGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAAT 38053 || ||| | || || || ||||||| ||||| |||||| Sbjct 3433268 ACCAACCCGGACTCCCGACGTTTGCTGGTAAGCGCCTGGAAT 3433309 >seq19 Length=1029424 Score = 149 bits (164), Expect = 2e-31 Identities = 528/830 (64%), Gaps = 49/830 (6%) Strand=Plus/Minus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGAC 37711 |||||| ||| | ||| || |||||||| | | || ||||| |||| || | |||| Sbjct 785668 ATGAAAGCCTATCTCGACCTGATGCAAGACGTTGTTGATAACGGATTCGACAAGGGAGAC 785609 Query 37712 CGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGAT 37771 || || || |||||||| | ||||||||||||||||||| |||| |||||| | || || Sbjct 785608 CGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTTCAACCTGCAGGAA 785549 Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 || ||||| || ||||| || || || | || | ||| ||| ||||||||| |||| Sbjct 785548 GGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTATTTATGAATTGCTC 785489 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 |||||| | ||| || || | || |||||||| || | || ||| Sbjct 785488 TGGTTTCTCCGGGGCTCCACCGACAACACCTGGCTGCAGGAGCGGAAGGTCTCCATCTGG 785429 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 | |||||||| || || || || ||||| || ||||||||| ||| ||||| Sbjct 785428 AACGAGTGGGCACTGGAGAATGGTGACCTCGGGCCCATTTACGGCAAGCAGTGGCGTAGC 785369 Query 37952 TGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAA 38011 ||| || | | | || | ||||||||||| || ||||| ||||| Sbjct 785368 TGGCAGTGCCCGAATGGTGAGGTGGTCGACCAGATCAGCGAAGTGATCGAACAGATCCGC 785309 Query 38012 CGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGA---------- 38061 || || |||| ||||| ||| | || || ||||| ||||| Sbjct 785308 ACCAAGCCCAATTCCCGCCGCCTGATTGTCTCTGCCTGGAACCCGGCAGAGCTCCCGGAT 785249 Query 38062 ------ATTGGAC-----------------GAG------ATGAAGCTGCCGCCGTGTCAT 38092 ||||| | ||| ||| ||| |||| || || Sbjct 785248 GAATCCATTGGCCCGCAGGATAACGTTCGTGAGGGCCGCATGGCTCTGGCGCCTTGCCAC 785189 Query 38093 TACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCC 38152 | | || |||||||| || ||| |||| || | || ||| | | |||||| | Sbjct 785188 TGCCTGTTCCAGTTCTACGTGGCCGACGGAAGGCTTTCCTGCCAGCTCTACCAGCGCAGC 785129 Query 38153 GTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATG 38212 | || ||| | || ||||||| || || || |||||| ||| | ||||| ||| Sbjct 785128 GCCGACCTGTTCCTGGGCGTGCCGTTCAATATTGCCTCCTACGCTCTGCTCACGCACATG 785069 Query 38213 GTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCAT 38272 | |||||||| |||||| |||| || || || || | ||| ||||||| || Sbjct 785068 ATTGCCCAACAGTGCGACCTGGAGGTTGGAGAGTTCGTGCATACCTTCGGCGACTGTCAC 785009 Query 38273 TTGTACAAAAATCATCTG---GAACA-AGCGAAACT----GCAGCTGACGCGCGAGCCGC 38324 ||||| | || |||||| || | | || || |||| ||| |||| |||| | Sbjct 785008 CTGTACCAGAACCATCTGACCGATGACATCG--TCTTCGAGCAGTTGAAGCGCAAGCCCC 784951 Query 38325 GCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACG 38384 || || |||||| ||| ||| | ||||| ||||| | ||||| || || || | Sbjct 784950 GCGCGTTGCCGACGCTGGTGATCAAACGCAAGCCCGAGAGCATCTTCGAGTACGAGCTGG 784891 Query 38385 ACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCG 38434 | ||||| || | | || || || |||||||||| || || || ||| Sbjct 784890 AGGACTTCGAGTTTGAGGGGTATGACCCGCATCCGGGCATCAAGGCGCCG 784841 >seq201 Length=246981 Score = 129 bits (142), Expect = 2e-25 Identities = 228/329 (69%), Gaps = 15/329 (5%) Strand=Plus/Minus Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828 ||||| || || || || ||||| || ||| |||| | |||||| | | |||||| Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTG 14225 Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888 || ||||| | || ||||||||| || ||| | |||| || ||||| |||| Sbjct 14224 CTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATC 14165 Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948 ||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||||||| Sbjct 14164 TGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGGCGC 14105 Query 37949 TCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCG---CATGGGTTGTCGAAGAG 38005 | ||| | | | ||| | ||||||||||||| | |||| || Sbjct 14104 GCCTGGCCGACGCCGCATGGGCA---GATCGACCAGATCGAGAAACTGGTT------CAG 14054 Query 38006 ATCAAACG-AAATCCGC--ATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAA 38062 || | || |||||| | | || ||||| ||| | ||| || ||||| || || Sbjct 14053 ATGATCCGCAAATCCCCCGACTCGCGCCGCCTGATCGTGTCGGCCTGGAACCCGGCCGAG 13994 Query 38063 TTGGACGAGATGAAGCTGCCGCCGTGTCA 38091 | ||||||||| |||||| || ||||| Sbjct 13993 GTCGACGAGATGGCGCTGCCCCCCTGTCA 13965 >seq562 Length=35438 Score = 122 bits (134), Expect = 2e-23 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828 ||||| || |||||||| || ||||||||| |||| | |||||||||||| | || || Sbjct 13005 GATGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGCTT 13064 Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888 || |||||||| |||||||| ||| || || || | || ||||| || |||| Sbjct 13065 CTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGATC 13124 Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948 ||||| ||||||||||| ||||| ||||| || || ||| | || || || |||||| Sbjct 13125 TGGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGTTACCAGTGGCGC 13184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130638864411800