Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq4 203 1e-47 seq6 174 5e-39 seq1 158 4e-34 seq2 127 6e-25 seq5 125 2e-24 seq251 113 1e-20 seq3 93.3 1e-14 >seq4 Length=3599618 Score = 203 bits (224), Expect = 1e-47 Identities = 801/1250 (64%), Gaps = 39/1250 (3%) Strand=Plus/Minus Query 1696 CGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAATCT 1755 |||||| || | || || ||||| || || || | ||||| || || | |||| | Sbjct 1129608 CGTGAAATCATCGATTCCCGCGGCAATCCCACCGTAGAAGTTGACGTCCATCTTGAAGGT 1129549 Query 1756 GGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTA 1815 || ||| |||| || | |||||| || || || || || || || |||||||| Sbjct 1129548 GGCGCAGTCGGCCGTGCAGCGGTTCCATCCGGCGCCTCCACCGGCGAGCACGAAGCCCAC 1129489 Query 1816 GAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGAT 1875 |||||||| ||||| ||||| | || ||| || || || |||| || || Sbjct 1129488 GAACTTCGCGATGGCGACAAGGACCGCTACCTCGGAAAGGGCGTTCTTCAAGCCGTGGAC 1129429 Query 1876 AACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTACGTGATCAACAAGGT 1935 | ||| ||| | | ||||| | ||||||| | || | || || || Sbjct 1129428 AGCGTCAACGAAACCCTCGCTGACGAACTCATCGGCCTTGATGCCACAGAGCA----GGC 1129373 Query 1936 ATTGACCG-CGCAATGATCGC---TCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGC 1991 ||| || | ||| || || | | ||||| || || |||||| ||||| ||||| Sbjct 1129372 CATGATCGACAAAATCATGGCGGATGTGGACGGCACACCGAACAAAAAGAAACTCGGTGC 1129313 Query 1992 CAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGT 2051 |||||| || || ||||| || |||| || ||| || || || | | | | || Sbjct 1129312 CAACGCCATCCTCGGTGTCTCCCTCGCGGTTGCAAAAGCCGCCGCCGCACAAGTCGGTGT 1129253 Query 2052 TCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAA 2111 || ||||||| ||||| ||||| ||| | || || ||||| || |||||||| Sbjct 1129252 CCCGCTTTACAAATACCTCGGCGGCCCGAACGCAAAGGTCCTTCCCGTCCCGATGATGAA 1129193 Query 2112 CATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGT 2171 |||||||||||| || || || || || || || |||| |||||| || || ||||| || Sbjct 1129192 CATCATCAACGGCGGATCCCATTCCGATGCACCGATCGATTTCCAGGAGTTCATGATCGT 1129133 Query 2172 ACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGC 2231 || | || || || || |||| ||| | |||||| || || ||| | |||||| | Sbjct 1129132 GCCAGTCGGCGCTCCCACTTTCAGTGAATCCGTTCGTTACGGCGCGGAAGTATTCCACTC 1129073 Query 2232 GCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTT 2291 ||||| | | || | || || ||| || || ||||||||||| || ||||| Sbjct 1129072 CCTTAAAAGCGTGCTCCATTCCCGCGGCCTTTCCACCGCAGTAGGTGACGAGGGCGGTTT 1129013 Query 2292 CGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGC 2351 ||| || ||||| | ||||| | | | ||| | | || |||||| Sbjct 1129012 CGCCCCGAAACTCGACTCTGCGGAAGACGCCCTCGGTGTCATCTGCCAGGCCATCGAAAA 1128953 Query 2352 TGCTGGATATGTACCAGGTA----AAGACGTATTTATCGGACTTGACTGTGCATCATCTG 2407 || || ||| ||||| | ||| | | |||| || ||| || || || | Sbjct 1128952 AGCCGG----TTACAAGGTAGGCGAGGACATTTCCATCGCCCTCGACGTCGCTTCCTCCG 1128897 Query 2408 AATTCTACGATGCAGAACGTAAAG---TTTACG-ACTACACTAAATTTGAAGGTGAAGGC 2463 |||||||||| ||| |||| | |||| | | ||| |||| || | | Sbjct 1128896 AATTCTACGACAAGGAA---AAAGGTCTCTACGTATTCCAC-AAATCCGA---TAA---- 1128848 Query 2464 GCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACAAA--- 2520 || | | || || ||||| | |||||| | | || || | ||| Sbjct 1128847 -CT-CGGAAAAAACGGCGGCAGAGCTCGTCGACTTCTACGCGGA---CCTTCAGAAACGC 1128793 Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 | ||| ||||| | ||||| ||||| ||||| |||||||||||||| |||||| | Sbjct 1128792 TTCCCTATCATTTCCATCGAGGATGGCTGTGACGAGAACGACTGGGACGGCTGGAAAACC 1128733 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | || | | | ||| | || ||||| ||| ||||||| || ||| Sbjct 1128732 CTCACCGAGAAAATCGGCGCCACAACCCAACTTGTCGGTGATGACCTCTTCGTCACCAAC 1128673 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTT 2700 | | ||| | || || || | || || ||||| ||||| | ||||| Sbjct 1128672 TCCAAGTTCCTCCAGAAGGGAATCGACCTCGGCGTGGCCAACTCCATCCTCGTGAAAGTG 1128613 Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760 ||||| |||||| | | || || || || || || | ||| | || || ||| | Sbjct 1128612 AACCAGATCGGTTCCCTCACCGAGACATTCGATGCCGTTGAACTCGCCAAGGAAAACGCC 1128553 Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820 ||||| || || | || ||||| || || || || || || |||||||| ||| | Sbjct 1128552 TACACCGCCGTTCTCTCCCACCGCTCCGGCGAGACAGAGGACAGCACAATCGCCGATCTC 1128493 Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880 || || || || ||| || || || ||||| || || |||| || | |||||||| Sbjct 1128492 GCGGTCGCCACGAACTGCGGCCAGATCAAGACCGGCTCCATGTCCCGCTCGGACCGTATC 1128433 Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGC 2930 || |||||||| ||| | || |||||||| || | || || || | ||| Sbjct 1128432 GCGAAATACAATCAACTCCTCCGTATCGAGGAAGAGCTCGGCGAGGATGC 1128383 >seq6 Length=3173221 Score = 174 bits (192), Expect = 5e-39 Identities = 276/393 (70%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| ||| || | || ||||| ||||||||||| | ||||||||| || |||||| Sbjct 3140340 TACCCGATCGTCTCCATTGAAGACGGTATGGACGAGAGCGACTGGGATGGCTGGAAAGTG 3140281 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || || ||| | || ||||| |||| || |||||| | ||||| || || Sbjct 3140280 CTGACCGACAAGCTCGGTAGCAAGGTTCAGCTGGTGGGCGACGACCTGTTCGTGACCAAT 3140221 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAA-CACGCTGCTAACTCAATCCTTATCAAAGT 2699 || ||| | ||||||||| |||| || || |||||| ||||| ||||| | Sbjct 3140220 ACCAAGATCCTCAAGCAAGGTATTG-AGAAGGGCGTTGGTAACTCCATCCTGATCAAGTT 3140162 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||||| ||| ||||| |||| || ||| | ||||| | || || || Sbjct 3140161 CAACCAGATCGGTAGCCTGAGCGAAACCCTTGATGCCATCAAGATGGCCCAGGATGCCGG 3140102 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 | ||| || || | || || || || |||||||| || || | || || || ||| | Sbjct 3140101 CTTCACCGCCGTGATTTCCCATCGCTCCGGTGAAACCGAGGACACCACCATTGCCGATCT 3140042 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 ||||| || || || || || || ||||| || || ||| ||| | || ||| | Sbjct 3140041 GGCAGTGGCCACCTGTGCCGGCCAGATCAAGACCGGCTCGCTGTGCCGTTCCGATCGTGT 3139982 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 ||| || |||||||| ||||| || || ||||| Sbjct 3139981 TGCCAAGTACAACCAGTTGCTGCGCATTGAAGA 3139949 >seq1 Length=7344524 Score = 158 bits (174), Expect = 4e-34 Identities = 288/415 (69%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 2503 GAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGAC 2562 ||||||| ||| || ||||| || ||| | | |||||||| ||| || ||||| | ||| Sbjct 6780930 GAAGAATGGGTAAATAAATATCCTATCCTGTCGATCGAAGACGGTTTGCACGAAGATGAC 6780989 Query 2563 TGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGAC 2622 ||||||| ||||| | | || || ||| |||| ||||| || |||| |||||| Sbjct 6780990 TGGGACGCCTGGAAGTTGATGACCGATCGTATTGGCAACAAAGTGCAGCTGGTAGGTGAC 6781049 Query 2623 GACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGA-ACACGCTGCTAA 2681 ||||| || || || ||||| ||| | ||||| | ||| || ||||| Sbjct 6781050 GACTTGTTTGTGACCAACACGAAGCGCCTGCAGCGTGGTATCG-AGATGGGAGCGGCTAA 6781108 Query 2682 CTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGA 2741 | ||||| ||||| || |||||||| |||||| |||| ||||| | || || | | Sbjct 6781109 CAGCATCCTGATCAAGGTAAACCAAATTGGTACTCTGACGGAAACCATCGATGCCGTACA 6781168 Query 2742 AATGGCGA----AAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTG 2797 |||| | | |||| |||| ||| ||| | |||||||| |||||||| | Sbjct 6781169 GTTGGCCACTCGCAACAGCT--ATAC-CAG-TGTAATGAGCCACCGTTCCGGTGAAACCG 6781224 Query 2798 AAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTT 2857 | ||| | || ||||| ||| | || || ||| || | || || || || || |||| Sbjct 6781225 AGGATACTACCATCGCAGATTTGGCGGTAGCACTCAATACAGGCCAGATCAAAACGGGTT 6781284 Query 2858 CATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | || ||| |||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 6781285 CTGCTTCTCGTTCTGATCGGATTGCCAAGTACAATCAATTGCTTCGCATCGAAGA 6781339 >seq2 Length=6328565 Score = 127 bits (140), Expect = 6e-25 Identities = 272/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| ||||| | |||||||| ||| | | |||| |||| |||||||| |||||| | Sbjct 2995305 TACCCGATCATTTCCATCGAAGACGGTCTTGCCGAAGACGATTGGGACGGCTGGAAAGCG 2995364 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || |||| ||| || |||||||| |||||| ||||||| || || Sbjct 2995365 ACCACCGATTTGGTTGGAAACAAATGCCAGTTGGTTGGCGACGACCTCTTCGTCACCAAT 2995424 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACA----CGCTGCTAACTCAATCCTTATCAA 2696 | | ||| || || || | ||| || ||| || || ||||| ||||| Sbjct 2995425 TCGGAGCGCCTGCGCAAGGGCATCG----ACATGGGCGTTGCCAATTCGATCCTGATCAA 2995480 Query 2697 AGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGC 2756 || ||||| || || || || ||||||| |||||||| | || | || | | || Sbjct 2995481 GGTCAACCAGATTGGCACGCTGTCTGAAACGCTTGACGCTGTGGAGACAGCACACAAGGC 2995540 Query 2757 TGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGA 2816 | || || || || | || ||||| || |||||||| ||||| || || || || Sbjct 2995541 GGCTTATACGGCGGTCATGTCGCACCGGTCCGGTGAAACAGAAGACAGCACCATTGCCGA 2995600 Query 2817 TATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCG 2876 |||| ||||| || || || || || |||||||| || | |||| ||||| | Sbjct 2995601 CCTTGCTGTTGCCACCAATTGCGGACAGATCAAGACAGGCTCCCTTGCACGCTCTGACAG 2995660 Query 2877 TATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGT 2922 | || ||||||||||| || | || || ||||| |||| ||| Sbjct 2995661 GCTCGCCAAATACAACCAGCTGATCCGGATTGAAGAAGAACTGGGT 2995706 >seq5 Length=3486096 Score = 125 bits (138), Expect = 2e-24 Identities = 257/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 2534 CTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACT--GAACG 2591 ||||||| ||||| ||||| || | |||||||| || ||| || || || ||| | Sbjct 1704141 CTATCGAGGATGGCATGGATGAGAGTGACTGGGATGGCTGGGAAATACTGACGAAGAAGG 1704082 Query 2592 TCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCT 2651 | ||| | | ||||| || ||||| || || |||| || || || || | || Sbjct 1704081 T--TGGCGATCGTGTTCAGTTAGTTGGCGATGATCTCTTTGTCACCAATACGGAGATTCT 1704024 Query 2652 TGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGG 2711 | || |||| | | |||||||||||| ||||| ||| | || || || || Sbjct 1704023 CAAGCGTGGAATTGATCAGTCTGTTGCTAACTCAATTCTTATAAAATTCAATCAGATAGG 1703964 Query 2712 TACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGT 2771 || | |||| ||||| || || || | ||||| | || || || || || || || Sbjct 1703963 GTCTCTTTCTGAGACTTTAGATGCGATTAATATGGCCATGGATGCCGGTTATACCGCTGT 1703904 Query 2772 AGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAAC 2831 | ||||| || |||||||| || |||||| | || || || ||| | || || || || Sbjct 1703903 TATTTCACATCGCTCAGGTGAGACAGAAGATACGACCATTGCGGATCTCGCGGTAGCGAC 1703844 Query 2832 TAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAA 2891 | || |||||||| || || ||||| ||| || |||| || | || |||||||| Sbjct 1703843 TGCAGCAGGTCAAATAAAAACCGGTTCTCTGTGTCGATCTGATCGCGTGGCGAAATACAA 1703784 Query 2892 CCAATTGCTTCGTATCGAAG 2911 | | | || |||||||||| Sbjct 1703783 TCGACTTCTGCGTATCGAAG 1703764 >seq251 Length=179782 Score = 113 bits (124), Expect = 1e-20 Identities = 275/417 (66%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| |||||| | ||||| || || |||| | ||||||||||| ||||| Sbjct 169536 TACCCGATCATCTCGATCGAGGACGGCTGTTCCGAAGATGACTGGGACGGCTGGAAGCTG 169595 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || ||| || || | || || ||| ||||||| ||||| | ||||| || ||| Sbjct 169596 CTGACCGAAAAGCTGGGCGACAAGGTCCAACTGGTTGGCGACGATCTGTTCGTGACCAAC 169655 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTT 2700 | || ||| | |||| || | | | | || ||||| || || | || || Sbjct 169656 CCCGCGCGCCTGGCCGAAGGCATCGAAAAGGGTGTCGCGAACTCGATGCTGGTGAAGGTC 169715 Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760 ||||| ||||| | |||| ||||| | || |||| |||||| | || | Sbjct 169716 AACCAGATCGGGTCGCTGACCGAAACCCTGCGGGCCGTCGATATGGCGCATCGCGCGCGC 169775 Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820 || ||| || | || ||||| || || || || || ||| |||| ||||| || | Sbjct 169776 TATACAAACGTGATGTCGCACCGCTCGGGCGAGACCGAGGATGCAACGATCGCCGACCTG 169835 Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880 || || || || ||| ||||| || ||||| || || || | || | ||||| || Sbjct 169836 GCGGTGGCCACGAACTGCGGTCAGATCAAGACCGGGTCGCTGGCGCGGTCCGACCGGCTT 169895 Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGAATAC 2937 || || |||||||| || | |||||||| || | || || || | || |||||| Sbjct 169896 GCCAAGTACAACCAGCTGATCCGTATCGAGGAACTGCTGGGCGAGGCGGCGGAATAC 169952 >seq3 Length=4400433 Score = 93.3 bits (102), Expect = 1e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 2089 GTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATC 2148 ||| | || || |||||||||||||||||||| || ||| ||| | ||| ||| ||| Sbjct 3811921 GTTTTGCCGACCCCAATGATGAACATCATCAATGGCGGTGAGCACGCGGACAATCCGATC 3811862 Query 2149 GCTTTCCAAGAATTTATGATTGTACCTGCTGGTGC-ACCAACATTCAAAGAAGCGCTTCG 2207 | | |||||||| |||||| | |||| | || || || || ||| ||| | || Sbjct 3811861 GACATTCAAGAATTCATGATTATGCCTGTGGCGGCTGACAGCA-TCGCAGACGCGGTGCG 3811803 Query 2208 TTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAAC 2267 || |||||||||||||| |||| ||||| | || | ||| || | | || Sbjct 3811802 CGTTGGATCTGAAATCTTCCACACGCTGAAGAAGACGCTGATGGAAGCCGGTCACAATAC 3811743 Query 2268 AGCCGTAGGTGACGAAGGTGGTTTCGCACC 2297 || ||| || |||||||| || |||||||| Sbjct 3811742 AGGCGTTGGCGACGAAGGCGGCTTCGCACC 3811713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156037043636208