Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq203 120 1e-21 seq309 84.2 9e-11 >seq203 Length=246280 Score = 120 bits (132), Expect = 1e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 349074 CGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGG 349133 ||| || ||||||||| | || ||||| |||||||||||||||||||| ||||||| Sbjct 56375 CGTTGATAATCTCCTTCACTCGGGGCACACCCAGGGTCACGTTCTTGGCGCTCACGCCGG 56316 Query 349134 CAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGA 349193 | || |||||||| | ||||||| |||||||| |||||| ||||| ||||| | || | Sbjct 56315 CGAAATGGAAGGTGTTTAGGGTCATCTGCGTGATGGGCTCTCCGATCGACTGGGCGGCCA 56256 Query 349194 GGATGCCTACCATCTCGCCGGGCGCG 349219 | | || ||||||||| ||| || Sbjct 56255 GAACTCCGCACATCTCGCCCGGCCCG 56230 >seq309 Length=139295 Score = 84.2 bits (92), Expect = 9e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 626280 GCATCGTCAACGAGGACAAGCGCGTCGTGTCTATGGGCTACAACGGCTTCCCGCGTGGCT 626339 ||||||||||| ||||||||||| ||||| ||| || ||||||||||||||| || | Sbjct 45650 GCATCGTCAACCAGGACAAGCGCATCGTGGGTATCGGGTACAACGGCTTCCCGATGGGTT 45709 Query 626340 GCAATGACGACGTCTTTCCTTGGAAGCGC 626368 ||| ||||| | ||| |||||| |||| Sbjct 45710 GCAGCGACGATGACTTGCCTTGGGCGCGC 45738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084719170868136