Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq201 183 5e-41 seq562 179 6e-40 seq4 150 3e-31 seq2 132 7e-26 seq19 118 2e-21 seq5 98.7 2e-15 seq1 87.8 3e-12 >seq201 Length=246981 Score = 183 bits (202), Expect = 5e-41 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183 ||||| |||||||| ||||| | |||||| ||||| ||| ||||| ||| Sbjct 14344 GACCGCACCGGCACCGGCACGATTTCCTATTTCGGCATGCAGCAGCGCTATTCCCTGGCG 14285 Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 || || ||||| |||||||| || |||||||| || ||| |||||| | || |||||| Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTG 14225 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 |||||||||||| |||||| || ||||||||||| || || |||||||| || || ||| Sbjct 14224 CTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATC 14165 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| |||| |||||| ||||| ||| | ||||| ||||||||||| ||| ||||| Sbjct 14164 TGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGGCG 14106 Score = 87.8 bits (96), Expect = 3e-12 Identities = 142/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 196787 CAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCTTAC 196846 |||||||| |||||| || || |||||||| || || || ||||||||||| |||||| Sbjct 13921 CAGCTGTACCAGCGTTCGGCCGACATGTTCCTGGGCGTGCCCTTCAACATCGCCTCTTAC 13862 Query 196847 GCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGCGAGTTCGT 196902 || |||| | |||| |||| || || || || | || ||||| ||||| Sbjct 13861 GCGCTGCTTCTGGTCATGCTGGCCCATGTCACCGGGTA----CGAGCCCGGCGATTTCGT 13806 Query 196903 TTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAGCT 196962 | ||| |||| ||||||||| ||||| || ||||| ||||| || ||||| Sbjct 13805 GCATTCCATCGGCGACGCCCACATCTATTCCAACCATATGGAGCAGGTGAAACTGCAGCT 13746 Query 196963 GTCTCGTAAACCGAAAGCGTTGCC 196986 ||| || | || | ||| |||| Sbjct 13745 GTCCCGCACGCCCCACGCGCTGCC 13722 >seq562 Length=35438 Score = 179 bits (198), Expect = 6e-40 Identities = 218/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGA 196125 |||||| || |||||||| ||| ||||| | || ||| ||| | | || Sbjct 12887 CATGCAGCAATATCACGACGCCTTGCAGCATATCCTTGACCACGGGGTCGAGACGACGGA 12946 Query 196126 CCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGA 196185 ||| ||||| || ||||| ||| | | ||||| || ||||| ||||| || Sbjct 12947 CCGCACCGGTACGGGCACCTTGTCGTGTTTCGGCATGCAACAGCGCTATGATCTTGCCGA 13006 Query 196186 CGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCT 196245 || |||||||| ||||||||||| ||||| || ||||| ||||||||||| || || || Sbjct 13007 TGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGCTTCT 13066 Query 196246 GTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTG 196305 |||||| | ||| || ||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 13067 GTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGATCTG 13126 Query 196306 GAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 | ||||||||||| | ||| || |||| |||||||| || ||| | |||||||| Sbjct 13127 GGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGTTACCAGTGGCG 13183 >seq4 Length=3599618 Score = 150 bits (166), Expect = 3e-31 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGG-CGCACAGATGCGCTTCGATCTGCA 196182 ||||| || ||||| ||||| ||| |||| ||| ||| |||| |||||||| Sbjct 201493 GACCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGC-CAGGCCCGCTACGATCTGCG 201551 Query 196183 AGACGGATTCCCGCTGG-TCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAAC 196241 || ||||| || ||| | ||||| ||||| || ||||| || || ||||| || || | Sbjct 201552 TGAGGGATTTCC-CTGCCTAACCACAAAGAAGCTTCATCTCCGCTCAATCATCCACGAGC 201610 Query 196242 TGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTA 196301 |||||||||||||||| || ||||||||||||| |||||||| || ||||| ||| | | Sbjct 201611 TGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACCA 201670 Query 196302 TCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGG 196350 ||||| |||| |||||| | ||| ||| |||| || || || ||||| Sbjct 201671 TCTGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGG 201719 >seq2 Length=6328565 Score = 132 bits (146), Expect = 7e-26 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCAC-AGATGCGCTTCGATCTGCA 196182 ||||| |||||||| || || || || | | | | || | |||||||| ||||| Sbjct 4241308 GACCGGACCGGCACCGGTACG-CGCTCTTTGTTTGGGTACCAAATGCGCTTTGATCTCGC 4241250 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || |||||||||||||| || || || || || ||||| || |||||||| || || Sbjct 4241249 CGAAGGGTTCCCGCTGGTCACGACCAAAAAGCTGCACCTGCGGTCGATCATTCACGAGCT 4241190 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 ||| ||||||||| ||| |||||||| ||| ||| || || || ||||| ||| || Sbjct 4241189 GCTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTCAAGGAAAACGGCGTCAAGAT 4241130 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| | || |||||| | || || | || || ||||| ||||| | |||||||| Sbjct 4241129 CTGGGATGACTGGGCGGATGAGAAGGGCGAGCTTGGTCCGGTCTACGGATACCAGTGGCG 4241070 >seq19 Length=1029424 Score = 118 bits (130), Expect = 2e-21 Identities = 181/254 (71%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 196114 CGACAAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTT 196173 |||||| | ||||||||||| ||||| ||| ||||| ||||| || || Sbjct 785621 CGACAAGGGAGACCGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTT 785562 Query 196174 CGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCAT 196233 | | ||||| || || || || ||||| ||||| ||||| |||| ||||| ||| || Sbjct 785561 CAACCTGCAGGAAGGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTAT 785502 Query 196234 TCATGAACTGCTGTGGTTCCTCAACGGGG--ACACCAACATCAAGTACCTGAATGACAAC 196291 | ||||| |||| ||||| ||| ||||| |||| ||| || | ||| | | | | Sbjct 785501 TTATGAATTGCTCTGGTTTCTC--CGGGGCTCCACCGACAACACCTGGCTGCAGG--AGC 785446 Query 196292 GG--TGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACG 196349 || ||||| ||||||||||||||||| || ||| |||| ||||| |||||| Sbjct 785445 GGAAGGTCTCCATCTGGAACGAGTGGGCACTGGAGAATGGTGACCTCGGGCCCATTTACG 785386 Query 196350 GTAAGCAGTGGCGT 196363 | |||||||||||| Sbjct 785385 GCAAGCAGTGGCGT 785372 Score = 105 bits (116), Expect = 1e-17 Identities = 217/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCG 196840 || || ||||| || ||||| || || || ||||||| || || |||||||| || || Sbjct 785152 TCCTGCCAGCTCTACCAGCGCAGCGCCGACCTGTTCCTGGGCGTGCCGTTCAATATTGCC 785093 Query 196841 TCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTC 196900 || ||||| |||| | |||||| | || |||||| || ||| || |||||| Sbjct 785092 TCCTACGCTCTGCTCACGCACATGATTGCCCAACAGTGCGACCTGGAGGTTGGAGAGTTC 785033 Query 196901 GTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATG---GA--ACAG-GTAGAA 196954 || || ||| ||| ||| | ||| || || || || ||| || Sbjct 785032 GTGCATACCTTCGGCGACTGTCACCTGTACCAGAACCATCTGACCGATGACATCGTCTTC 784973 Query 196955 GAACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGAC 197014 || ||| || || || || ||||||||||||||||| ||||||||||| || || Sbjct 784972 GAGCAGTTGAAGCGCAAGCCCCGCGCGTTGCCGACGCTGGTGATCAAACGCAAGCCCGAG 784913 Query 197015 AGTATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCG 197074 || |||||||| ||| | | || |||||||| | | || || || |||||||||| Sbjct 784912 AGCATCTTCGAGTACGAGCTGGAGGACTTCGAGTTTGAGGGGTATGACCCGCATCCGGGC 784853 Query 197075 ATTAAAGCCCCGGTGGCTAT 197094 || || || ||| | || || Sbjct 784852 ATCAAGGCGCCGATTGCCAT 784833 >seq5 Length=3486096 Score = 98.7 bits (108), Expect = 2e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 196118 AAAGCTGACCGTACCGGCACAGGCAC-TACGTCCTATCTCGGCGCACAGATGCGCTTCGA 196176 |||| ||||| ||||||||||| || | | | | | ||| |||||||| || || Sbjct 3432959 AAAGAAGACCGAACCGGCACAGGGACGCTCAGCGTGT-TTGGCTATCAGATGCGTTTTGA 3433017 Query 196177 TCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCA 196236 |||| | || || || |||||||||| || || |||||| || || || ||||| Sbjct 3433018 TCTGGCTCAGGGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCCGCTCTATTATTCA 3433077 Query 196237 TGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGT 196296 ||| ||||| ||||| || | || |||||| ||| ||| |||| || || || || Sbjct 3433078 TGAGCTGCTTTGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGAACGATAATGGCGT 3433137 Query 196297 CTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCA 196356 | || ||| | || ||||| | ||| ||| | || || ||||| || || |||| Sbjct 3433138 CAAGATTTGGGATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGGTATATGGGGAGCA 3433197 Query 196357 GTGGCG 196362 |||||| Sbjct 3433198 GTGGCG 3433203 >seq1 Length=7344524 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 4469156 GTAGTTCAGTTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 4469097 Query 3857 C 3857 | Sbjct 4469096 C 4469096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771535340387040