Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq623 185 1e-41 seq426 116 5e-21 seq452 100 4e-16 seq5 96.9 5e-15 seq6 95.1 2e-14 seq457 89.7 7e-13 seq3 87.8 2e-12 >seq623 Length=26265 Score = 185 bits (204), Expect = 1e-41 Identities = 367/536 (68%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 162307 CAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAG 162366 || || || ||| | |||||||| | || ||||| |||||| |||| || ||||| Sbjct 8948 CAGCCGGACGAAGTCTATAACCTCGCCGCGCAGAGCCACGTTCAGGTATCCTTTGAAACC 8889 Query 162367 CCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGT 162426 || |||||||| | | | | ||||| | || || || | |||| || ||| |||| Sbjct 8888 CCGGAATACACGGGAAACGCGGACGCTCTCGGTACCCTGCGCCTGCTCGAGGCCATCCGG 8829 Query 162427 CTTCTTGGTATGGA---ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTAT 162483 ||||| || || || | | ||| | ||||||| || ||| |||||| || Sbjct 8828 CTTCTCGG-ATTGAGCGAGAAAACGC--GCTTCTACCAGGCCTCCACGTCTGAGCTCTAC 8772 Query 162484 GGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTAT 162543 || || ||||| || ||| ||||||||||| | |||||| || ||||||| Sbjct 8771 GGAAAGGTACAGGAAGTTCCGCAGTCGGAAACCACTCCTTTCTATCCAAGAAGCCCTTAT 8712 Query 162544 GGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATA 162603 | | || || || || | | |||||| || |||||| | ||| ||| | ||| Sbjct 8711 GCCGCGGCAAAGCTCTACGCCTATTGGATCGTCGTCAACTACCGTGAAGCCTACGGCATG 8652 Query 162604 CATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTC 162663 || ||| | ||| || || ||||||||||||||| | | | || || || ||||| Sbjct 8651 CACGCCAGCAACGGCATCCTCTTCAATCACGAAAGCCCGATCCGCGGCGAAACCTTCGTG 8592 Query 162664 ACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA--AAGTGATCTAC 162721 || ||||||||| ||| ||| || || | |||| || || | | ||||| Sbjct 8591 ACCCGCAAGATCACCCGCGCCGCCGCCGCGATCAAACTGGGCCTTCAGGACAAGCTCTAC 8532 Query 162722 AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTA-GAGGCT 162780 ||||| ||||| | ||| |||||||||||| || || ||||||||||| | ||| Sbjct 8531 --CTTGGTAACCTGGACGCCGAACGTGACTGGGGGCATGCAAAAGACTACGTCCGCGGC- 8475 Query 162781 ATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 |||||| ||||||| ||||| || ||| | ||||||||||| | || ||||| || Sbjct 8474 ATGTGGCTGATGCTGCAGCAGGACAAGGCGGATGATTATGTTCTGGCGACTGGGGA 8419 >seq426 Length=76046 Score = 116 bits (128), Expect = 5e-21 Identities = 253/376 (67%), Gaps = 2/376 (1%) Strand=Plus/Plus Query 162474 TGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACG 162533 |||||||||||| || ||||| | ||||||| |||||||| || | | || || Sbjct 32304 TGAGCTTTATGGCAAGGTGCAGGAAATCCCCCAGAGTGAAACCACGCCGTTTCACCCGCG 32363 Query 162534 ATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAG 162593 || || |||| || || || | |||| | ||||||| || || | ||||| Sbjct 32364 TTCGCCCTATGCGGTGGCCAAGATGTATGCCTATTGGATCACGGTGAATTATCGCGAAAG 32423 Query 162594 CTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGA 162653 ||||| || |||||| | ||| || || ||||||||||||||| |||| | || || Sbjct 32424 CTATGGGATGTATGCCTGCAACGGCATCCTGTTCAATCACGAAAGCCCACGTCGCGGCGA 32483 Query 162654 GACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAG 162713 ||| || || || ||||||||| || | ||||| || |||| || | Sbjct 32484 GACCTTTGTGACCCGCAAGATCACGCGGGGTCTGTCCAATATCGCCATGGGGCTGGAGCC 32543 Query 162714 TGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGT 162773 ||| | | || || || | || | || |||||||| || ||||| ||||| || Sbjct 32544 CTGTCTTTATATGGGCAATATCGACGCTCTGCGCGACTGGGGCCATGCCAAGGACTATGT 32603 Query 162774 AGAGGCT-ATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTG 162832 | | | |||| ||||||| ||||| || |||| || |||| ||| ||||| || | Sbjct 32604 -GCGCATGCAGTGGATGATGCTGCAGCAGGACGAGCCGGAGGATTTTGTCATCGCCACCG 32662 Query 162833 GTGAGCAGTATTCTGT 162848 | | ||| ||||| || Sbjct 32663 GGGTGCAATATTCCGT 32678 >seq452 Length=65161 Score = 100 bits (110), Expect = 4e-16 Identities = 252/381 (66%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 162304 GTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGAT 162363 || || || || || || || ||||| || || || || ||||| ||| || || Sbjct 49403 GTCCAGCCGGACGAGATCTACAACCTTGGTGCGCAAAGCCACGTCGCGGTCAGCTTCGAG 49462 Query 162364 CAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTC 162423 ||| |||||||| || | || || | ||||| || | | || ||||| || Sbjct 49463 GTGCCGGAATACACCGCCGATGTGGATGCCATCGGCACCCTGCGCCTTCTCGAAGCGATC 49522 Query 162424 CGTCTTCTTGGTATGGA--ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTT 162481 || |||| || |||| | | ||| | ||||||| || ||| ||||||| Sbjct 49523 CGCATTCTGGGGCTGGAGAAAAAGACGC--GGTTCTACCAGGCCTCGACCTCGGAGCTTT 49580 Query 162482 ATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTT 162541 | || | || |||||| || ||| ||||| || || | || || || || || | Sbjct 49581 ACGGTCAGGTGCAGGAGGTCCCGCAGCGCGAAACGACGCCTTTCTACCCCCGCTCGCCCT 49640 Query 162542 ATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACA 162601 ||| || || || || |||| | |||||| | |||||| | || ||||| | Sbjct 49641 ATGCCGTGGCCAAGCTCTATGCCTATTGGATCTGCGTGAACTACCGCGAGGCCTATGGGA 49700 Query 162602 TACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCG 162661 | |||||| | ||| || || ||||||||||||||| |||| | || ||||| |||| Sbjct 49701 TCTATGCCTGCAACGGCATCCTCTTCAATCACGAAAGCGAACGCCGCGGCGAGACCTTCG 49760 Query 162662 TCACACGCAAGATCGTCCGAG 162682 | || ||||||||| ||||| Sbjct 49761 TGACCCGCAAGATCACCCGAG 49781 >seq5 Length=3486096 Score = 96.9 bits (106), Expect = 5e-15 Identities = 376/594 (63%), Gaps = 23/594 (4%) Strand=Plus/Minus Query 162103 GTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCTCCTT 162162 || || || || || || | |||||||||||||| || || | ||||| ||||| || Sbjct 2522514 GTGGCGCTAATAACAGGCGTGACAGGGCAAGATGGCTCCTATTTGGCTGAGCTTCTTCTC 2522455 Query 162163 CAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACACCCACAGA 162222 | ||||| || ||| || ||||||| ||||| || || |||| || | || Sbjct 2522454 GAAAAAGGCTACGAAGTACATGGTATTAAGCGTCGCGCATCCTCTTTTAATACTGAGCGA 2522395 Query 162223 ATTGACCATATCTTTGAC---------------------CGCATCACTCTCCATTATGGA 162261 | || ||||| | | | ||| ||| || |||||||| Sbjct 2522394 GTGGATCATATTTATCAAGATCCACATATAGAAAATGCGCGCTTCAAACTGCATTATGGT 2522335 Query 162262 GACCTTACCGATGCTTTGAGTATCGTATCTATTATTAAAACAGTTCAACCAGATGAAATA 162321 || ||||| ||| | | | | | | |||| | | || | || |||||| | Sbjct 2522334 GATCTTACTGATACATCCAATTTGACACGTATTCTGAGTGAGGTAAAGCCTGATGAAGTC 2522275 Query 162322 TATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGA-TCAGCCTGAATACACAGC 162380 ||||| || || |||||| ||| || |||||||| || ||| ||||| ||||| || Sbjct 2522274 TATAATCTTGGTGCTCAGTCTCATGTCGCTGTTTCATTCGAGTCA-CCTGAGTACACCGC 2522216 Query 162381 ACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTGGTATGGA 162440 | | || || | ||||| || | ||||||| | | || |||||||| | || Sbjct 2522215 AGACGTTGATGCTATTGGCACACTTCGCTTGCTAGAGTCTATACGCTTTCTTGGTTTAGA 2522156 Query 162441 ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGAC 162500 | | | |||||||||| |||| ||||||||||| |||||||||| | Sbjct 2522155 CAAAAAAACCCGCTTCTACCAAGCTTCCACCTCAGAGCTTTATGGTTTAGTTCAGGAAAT 2522096 Query 162501 ACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATA 162560 || || | || ||||| || | || ||| | || ||||||| ||||| || | || Sbjct 2522095 CCCTCAAAGGGAGACCACGCCGTTTTACCCAAGGTCGCCTTATGCGGTTGCAAAGATGTA 2522036 Query 162561 TGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTAT 162620 || | ||||| || || | ||| |||| ||| | || | || ||||| Sbjct 2522035 TGCCTATTGGATAGCTGTGAATTATCGCGAAGCTTATGGCATGTACGCTTGTAATGGTAT 2521976 Query 162621 TCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 | | || |||||||| | |||| | ||||| || || ||||| || || || Sbjct 2521975 TTTGTTTAATCACGAGTCCCCACGTCGCGGAGAAACTTTTGTCACTCGTAAAAT 2521922 Score = 89.7 bits (98), Expect = 7e-13 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 163247 AATAAAGTTGATTA--TGTAATCCTAGCTGCTGCCCTAGTCGGCGGCATTATGGCTAACA 163304 |||||| ||||| | | || | ||||||| || ||| || || ||| | || |||| Sbjct 2521238 AATAAAATTGATGAAATCTATT--TAGCTGCGGCGAAAGTTGGTGGAATTGTTGCAAACA 2521181 Query 163305 AGACTCGCAAAGCGGAGTTCTTACACGACAATCTAATGATGCAGTGTAATGTAATTGACT 163364 | | | ||| || || | |||| ||||||||| || |||||||| |||| | | Sbjct 2521180 ATAACTACCCAGCAGACTTTATCTACGAAAATCTAATGGTGGAGTGTAATTTAATCCAGT 2521121 Query 163365 CTGCTTACTATTCAGGTGTTAAGAAGCTCCTATTCCTAGGAACATCTTGCATCTATCCT- 163423 |||| | | || |||||| | ||||| || || || || | || || || ||||| Sbjct 2521120 CTGCGCATCAGTCTGGTGTTGATAAGCTGCTTTTTCTCGGCTCTTCATGTATTTATCCAA 2521061 Query 163424 -GCTGGACGCCAACACCCACTAAAAGAAAATGAACTCCTTACGGGGGCTCTTGAGCCTAC 163482 | | | || | || ||| | | ||| || | | ||||| || | | || ||||| Sbjct 2521060 AGTTAGCCG--AGCAGCCAATGAGAGAGGTTGCATTGCTTACCGGAGAGTTGGAACCTAC 2521003 Query 163483 TAACGACGCTTACGCCATCGCAAAGATCGCAGGAATCAAACAATGTGA 163530 |||||| | ||||| || || || |||||||| || |||| ||||| Sbjct 2521002 TAACGAACCCTACGCTATTGCGAAAATCGCAGGTATTAAACTCTGTGA 2520955 >seq6 Length=3173221 Score = 95.1 bits (104), Expect = 2e-14 Identities = 392/607 (65%), Gaps = 16/607 (3%) Strand=Plus/Plus Query 162250 CTCCATTATGGAGACCTTACCGATGCTTTGAGTATCGTATC-TATTATTAAAACAGTTCA 162308 || || ||||||||||| || ||| | | || | | | || |||| | | ||| || Sbjct 1998170 CTGCACTATGGAGACCTCACGGATTCGTCGAATCT-GACTCGTATTTTGCAGGAAGTACA 1998228 Query 162309 ACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTT--GATCAG 162366 ||||| || | |||||||| || || ||| |||||| | | ||| || || Sbjct 1998229 GCCAGACGAGGTGTATAACCTGGGTGCCCAGTCCCACGTT--GCTGTCAGTTTCGAATCC 1998286 Query 162367 CCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGT 162426 || || ||||| || | || ||| |||| || || | |||| ||||| | || Sbjct 1998287 CCGGAGTACACCGCTGATGTGGATGCAATGGGAACCCTGCGTTTGCTTGAAGCGATTCGG 1998346 Query 162427 CTTCTTGGTATGGA--ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATG 162484 | |||||| | || | | ||| || | || || ||| || ||||| || | Sbjct 1998347 TTCCTTGGTCTTGAGAAGAAAACGAAAT--TTTATCAGGCGTCTACATCAGAGCTCTACG 1998404 Query 162485 GGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATG 162544 |||| || ||||| || || ||||||||||| || || | |||| || || || |||| Sbjct 1998405 GGCTGGTGCAGGAAACCCCGCAGAAAGAAACAACGCCTTTCCATCCTCGCTCACCCTATG 1998464 Query 162545 GAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATAC 162604 ||| || || || || | | ||||||| | ||| ||| | || ||| | || Sbjct 1998465 CAGTGGCCAAGCTTTACGCCTACTGGATCGCCGTAAATTACCGCGAGGCCTACGGGATGT 1998524 Query 162605 ATGCCTCTAGCGGTATTCTATTCAATCACGAA-AGCTCACGCAGAGGAGAGACGTTCGTC 162663 |||||| | || || | |||||||||||| || || || | || || || ||||| Sbjct 1998525 ATGCCTGCAATGGGATATTGTTCAATCACGAATCGCCCAGGC-GCGGTGAAACCTTCGTT 1998583 Query 162664 ACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAA 162723 || || |||||| ||| | | || || ||| || || | | | | Sbjct 1998584 ACGCGAAAGATCACCCGGGGGCTCGCCAATATCGCACAGGGCCTGGAATCTTGTTTGTAT 1998643 Query 162724 CTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTA--GAGGCTA 162781 | || ||| | |||||| | || ||||| || || |||||||| ||| | || Sbjct 1998644 ATGGGCAACATGGATGCCCTGAGGGATTGGGGGCATGCGAAAGACTATGTACGTATGC-- 1998701 Query 162782 TGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGCAGT 162841 |||| | ||||||||||| || | || || || | |||||| || || || | |||| Sbjct 1998702 AGTGGCTAATGCTTCAGCAGGATCAACCGGAAGACTTTGTGATTGCCACGGGGGTTCAGT 1998761 Query 162842 ATTCTGT 162848 |||| || Sbjct 1998762 ATTCGGT 1998768 >seq457 Length=62169 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| |||| |||||||| Sbjct 42722 GGGGCATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAGCGGTTCGATC 42781 Query 142853 CCGTTATTCTCCACCAA 142869 ||| ||| ||||||||| Sbjct 42782 CCGCTATGCTCCACCAA 42798 >seq3 Length=4400433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 162488 TAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAG 162547 |||||||||| ||||| ||| || || || || | ||||| || ||| || || | Sbjct 3198981 TAGTTCAGGAAACACCGCAGCGCGAGACAACACCTTTTTATCCGAGAAGCCCATACGGTG 3199040 Query 162548 TTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATG 162607 | || ||||| || | | ||||| | |||||| | || || | || | | Sbjct 3199041 TCGCGAAACTCTACGCTTATTGGATAACTGTTAACTACCGCGAGTCGTACGGGATGTACG 3199100 Query 162608 CCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACAC 162667 ||| || ||||||||| ||||||||||||||| | || | || ||||| ||||| || | Sbjct 3199101 CCTGTAACGGTATTCTGTTCAATCACGAAAGCCCTCGTCGGGGTGAGACATTCGTGACTC 3199160 Query 162668 GCAAGATC 162675 |||||||| Sbjct 3199161 GCAAGATC 3199168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691452873148320