Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq28 275 9e-72 seq30 109 8e-22 >seq28 Length=1232018 Score = 275 bits (304), Expect = 9e-72 Identities = 203/232 (88%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||| | Sbjct 5279 GTACAAAGGGCAGGGACGTAATCAATGCGAGCT-GATGACTCGCGTTTACTAGGAATT-C 5336 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| |||| ||| ||||||||||||||||||| ||||||||| | ||||| ||||| Sbjct 5337 CTCGTTCAAGATCAATAATTGCAATGATCTATCCCTATCACGATGCACGTTCAACAGATT 5396 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT---AGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||||| ||| ||| || ||| | | |||||||| || |||||||||||||||||| Sbjct 5397 ACCCGGGCCTCTCGACCCAGGAAAAGTAAAACTCGTTGCATGCATCAGTGTAGCGCGCGT 5456 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 5457 GCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTCC 5508 >seq30 Length=4005922 Score = 109 bits (120), Expect = 8e-22 Identities = 140/189 (74%), Gaps = 12/189 (6%) Strand=Plus/Plus Query 38 GACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC- 96 |||||||| || ||||||||| | |||| |||| || || | ||||||| ||||||| Sbjct 3205114 GACTCGCGGTTGCTAGGAATT-CATCGTCCAAGATCAGAAACTACAATGATTTATCCCCC 3205172 Query 97 ------ATCACGATGAAATTTCAA-AGATTACCCGGA-CCTGTCGG--CCAAGGTGATAG 146 |||||||| | ||||| | | ||||||| ||| ||| | || | | Sbjct 3205173 TAAATTATCACGATACATGTTCAACATAATACCCGGGGCCTCTCGATTCAAAAAAGTGAA 3205232 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||| ||| || |||||||||||||||||||||||||| || | |||||||| ||||| Sbjct 3205233 ACTCTTTGCATGCATCAGTGTAGCGCGCGTGCGGCCCACGACGCCCAAGGGCATTACAGA 3205292 Query 207 CCTGTTATT 215 |||||| || Sbjct 3205293 CCTGTTCTT 3205301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751990748050