Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq28 370 4e-100 >seq28 Length=1232018 Score = 370 bits (410), Expect = 4e-100 Identities = 487/660 (74%), Gaps = 36/660 (5%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| ||||||||||||| |||||| |||||||| || ||| |||||||| | ||||||| Sbjct 4077 TTCTACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAAG 4018 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||| | || ||||||||||||| ||||||| |||| |||||||| |||| ||| Sbjct 4017 CTAAACACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACT 3958 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| ||||||||||||| || | |||||||| ||||||||||||| | |||||| | Sbjct 3957 TTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGT 3898 Query 214 TGCCCGCAGTT--GCTCAACCG--GCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCA 269 | || ||| ||| || | ||||||| ||| | | |||| | ||| Sbjct 3897 --CTGGCGGTTCCGCTTCTCCTTTGTCCCTCGGG----GCATTGGTTTGCGTTTCCGCCG 3844 Query 270 GCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTA 329 ||| || ||| || | | |||| | || || |||| ||| | Sbjct 3843 TGGCCAG-------GGCCGGGTAGTGTTGC-GGGAGTCTGCGCC---TCGGAAGGTAGCA 3795 Query 330 TAGCC-CGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG-CTCCGGCTAGGATGCT 387 | | ||| ||| || | ||| ||| || ||| ||| | | ||| | | || Sbjct 3794 TCTCTTCGGAGTG---TGAAGACCG--TGGCGTGTCGTC-GCGACGCTGGCCGG--TTCT 3743 Query 388 GGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGC 447 | || ||||||| | ||||||||| |||||||||||||||||||||||| || Sbjct 3742 GACGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGC 3683 Query 448 GAGTGTTTGGGTGT-CAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506 |||| |||||| ||||||| | ||| | |||||||||| | ||||||||| ||| Sbjct 3682 GAGTACAGGGGTGTTCAAACCCCCGTGCGCAGTGAAAGTGAATGCAGGTGGGAAGCCGCA 3623 Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATG---GATTTGAGTAAGAGCATAGC 563 ||| |||||||||||||| | || | ||||||| | | ||||||| |||| | Sbjct 3622 AGGTGGCACCATCGACCGACCATG-TCTCTTCGGGGGCGAGGTTTGAGTGTGAGCGTGCA 3564 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 3563 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTG 3504 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| |||| ||||| |||||||||||||||| | |||||||||||||||||| Sbjct 3503 GTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTGAGATTTGGGTATAGGGGCGA 3444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079972758500