Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq875 129 8e-28 >seq875 Length=31036 Score = 129 bits (142), Expect = 8e-28 Identities = 177/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||| || ||||||||||| |||||||| |||||||| ||| | | || ||| |||| Sbjct 30138 CCTACCGGCACCGGGCAGGTGTCAGTCCCTATACATCCTCTTGC-GAGTTAGCAGAGACC 30196 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| | ||| | ||| | | | |||| Sbjct 30197 TGTGTTTTTAATAAACAGTCGCTACCCCCGATTTTGTGCCAAAAATAAGAGCTTG----- 30251 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || || | | || |||| | |||||||||| | | ||||||||||| ||||| Sbjct 30252 -CGCTC--CAT-ATTTTTACTCCTTATTCCGAAGTTACAGAGTCATTTTGCCGAGTTCCT 30307 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | || || | | | || |||||||| | ||| ||||| ||||||||| ||||||| | Sbjct 30308 TCAACA-AGGTTATCTCAAAGCCTTAGTGTGCTCCACCTGTCCACCTGTGGCGGTTTAAG 30366 Query 246 GTA 248 ||| Sbjct 30367 GTA 30369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694391456710