Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq28 286 6e-75 seq555 91.5 2e-16 seq443 73.4 6e-11 >seq28 Length=1232018 Score = 286 bits (316), Expect = 6e-75 Identities = 222/261 (85%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5427 ACTCGTTGCATGCATCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGA 5486 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||| | ||||||| ||| | | ||| |||||||||||||||| || Sbjct 5487 CCTGTTATTGCCCCCAACTTCCTCTGGTTAGTCACCAGAAGTCCCTCTAAGAAGCGAGT- 5545 Query 122 ACCAAC-CATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 ||| || || | || | |||||||||||| |||||||||||||| ||||| Sbjct 5546 ACCTACGCAAAAGCGTAAGCCACACTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAA 5605 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5606 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 5665 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 5666 AGAAAGAGCTCTCAATCTGTC 5686 >seq555 Length=2081 Score = 91.5 bits (100), Expect = 2e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2081 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATCTGTC 2029 >seq443 Length=400297 Score = 73.4 bits (80), Expect = 6e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||||| |||||||||||||||||||||||||| |||||||||| ||| Sbjct 126105 CCAGACTAATCACTCCACCAACTAAGAACGGCCGTGCACCACCAACCA 126058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796790196870