Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1254 352 5e-95 seq28 347 2e-93 seq925 136 7e-30 seq15 96.9 6e-18 >seq1254 Length=1139494 Score = 352 bits (390), Expect = 5e-95 Identities = 236/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 507 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 448 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||| || ||| || |||||| | ||||||||||||||||| Sbjct 447 TTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGCCGA 388 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 328 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | |||| | | ||||||||||||||||| Sbjct 327 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATCCAAAAGAACTAAAGGATCGATAGG 268 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||| |||||| |||||||||| Sbjct 267 CCATGCTTTCACAGTTTGTATTC 245 >seq28 Length=1232018 Score = 347 bits (384), Expect = 2e-93 Identities = 236/264 (89%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1358 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 1417 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||| || ||| || |||||| | ||||||||||||||||| Sbjct 1418 TTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGCCGA 1477 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1478 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 1537 Query 211 CTGTGGTAAC-TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||| ||||||| |||||||||| | |||| | | |||||||||||||||| Sbjct 1538 CTGTGGTAACTTTTTCTGACACCTCTAGCTTAAAATCCAAAAGAACTAAAGGATCGATAG 1597 Query 270 GCCACACTTTCATGGTTTGTATTC 293 |||| |||||| |||||||||| Sbjct 1598 GCCATGCTTTCACAGTTTGTATTC 1621 >seq925 Length=683462 Score = 136 bits (150), Expect = 7e-30 Identities = 95/108 (88%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 211162 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTAAAAT 211221 Query 246 TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||||||||||||||| |||||| |||||||||| Sbjct 211222 CCAAAAGAACTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 211269 >seq15 Length=5788546 Score = 96.9 bits (106), Expect = 6e-18 Identities = 119/155 (77%), Gaps = 11/155 (7%) Strand=Plus/Minus Query 144 GAGCCGACATCGAAGGAT-CAAA-AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||| ||||||||| | || | ||||||||||| | ||||||||||||||||||||| Sbjct 2604544 GAGCACACATCGAAGAACGCACACAAGCAACGTCGTCACGAACGCTTGGCTGCCACAAGC 2604485 Query 202 CAGTTATCCCTGTGGTAACTTTTC--TGGCACCTCTAGCCTCAAATTTC-GAGGGACT-A 257 || ||||| || | ||||| || |||||||||| | ||| | | | | ||| | Sbjct 2604484 ----TACCCCTGCGGCATTTTTTCTTTGACACCTCTAGCTTTAAAATCCAAAAGCACTAA 2604429 Query 258 AAGGATCGATAGGCC-ACACTTTCATGGTTTGTAT 291 ||||||||||||||| | |||||| |||||||| Sbjct 2604428 AAGGATCGATAGGCCTTCGCTTTCACAGTTTGTAT 2604394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854389149120