Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq875 150 3e-34 seq28 78.8 1e-12 >seq875 Length=31036 Score = 150 bits (166), Expect = 3e-34 Identities = 136/171 (80%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 |||||||||||||||||||||| ||||| || |||| || || || ||||| Sbjct 29346 TCCCGGTCCTCTCGTACTAAGGTTTAGTCCTCGGAATTTTCAAACACCTACAGAAGATAG 29405 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||||| ||||||||| ||||||||| |||||| ||| ||| || |||| | |||||||| Sbjct 29406 GGACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCGTCGGCGAACA 29465 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||| |||| | |||| |||||||| || ||| |||||||| Sbjct 29466 GCCGAACCCTTGGAACCTTTTCCAGCTCCAGGATGTGATGAGTCGACATCG 29516 >seq28 Length=1232018 Score = 78.8 bits (86), Expect = 1e-12 Identities = 98/134 (73%), Gaps = 13/134 (10%) Strand=Plus/Plus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 |||||| ||| ||| | || |||||||||||||||| || || |||||| | Sbjct 259563 CACCAGCGGTATGTTCTTCTTGGTCCTCTCGTACTAAAGAAGAATCATCTCAA------T 259616 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG-TGC 206 || || || | ||||||||||||||| |||||| ||||||||||||| || | | Sbjct 259617 ACTCC------GGGTTTGGACCGAACTGTCTCACGACGTCCTGAACCCAGCTCACGTTAC 259670 Query 207 CTCTTTAATGGGCG 220 | |||| | ||||| Sbjct 259671 CGCTTTCACGGGCG 259684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780790393720