Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq28 571 2e-160 seq657 311 3e-82 seq10 203 1e-49 seq1254 136 1e-29 seq925 136 1e-29 seq875 80.6 9e-13 >seq28 Length=1232018 Score = 571 bits (632), Expect = 2e-160 Identities = 449/534 (84%), Gaps = 9/534 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 1655 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTTATC 1714 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| |||| | | |||| Sbjct 1715 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATGTTGTCTCCCGCGTAGATC 1774 Query 127 GGCCCG-CGAAGGACCTTAACGCCAGAAA--ATGGTCGGTGAAGACCAGT----TCCGCT 179 | || | || | ||| | |||||| | | | | || | | | || | Sbjct 1775 GCCCTAACAAAAGGACTTCAGTCCAGAATCCACCGCCCGCGAGGGCGATAGAACTCTACC 1834 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 | | || ||||||||| ||| || | || | ||||||||| || | || | ||| Sbjct 1835 TGACGGAATAAGTAAAACAACATTACGAGTGGCGGTATTTCATCGTCGGCAAAGC--CTC 1892 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 || | ||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1893 CCGCCTATTCTACACCTCATAAGTCATTTCACAACATCGGACTAGAGTCAAGCTCAACAG 1952 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | Sbjct 1953 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACA 2012 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 2013 GTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACG 2072 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2073 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 2132 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2133 AATTCCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 2186 >seq657 Length=205588 Score = 311 bits (344), Expect = 3e-82 Identities = 180/185 (97%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 66055 TTCGCTCGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTA 66114 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66115 GTTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 66174 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 66175 GCGCTTGGTTGAATTCCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 66234 Query 529 CAACA 533 ||||| Sbjct 66235 CAACA 66239 >seq10 Length=4527641 Score = 203 bits (224), Expect = 1e-49 Identities = 114/115 (99%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2073777 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 2073718 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2073717 GAATTCCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 2073663 >seq1254 Length=1139494 Score = 136 bits (150), Expect = 1e-29 Identities = 90/100 (90%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 211 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTTATC 152 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 |||||||||||||||||||||||||||||||||||||||| Sbjct 151 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 112 >seq925 Length=683462 Score = 136 bits (150), Expect = 1e-29 Identities = 90/100 (90%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 211303 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTTATC 211362 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 |||||||||||||||||||||||||||||||||||||||| Sbjct 211363 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 211402 >seq875 Length=31036 Score = 80.6 bits (88), Expect = 9e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| | |||||| ||||||||||| ||| | ||| ||| ||| |||| Sbjct 30003 GACAGCGGGGAAGTCGTTACACCATTCATGCGGGTCGGAACTTACCCGACAAGGAATTTC 30062 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||| || ||||||||||| |||||||||||| | | ||| Sbjct 30063 GCTACCTTAGGACCGTCATAGTTACAGCCGCCGTTTACCGGGGTTTG 30109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635179232960