Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1254 134 2e-29 seq28 134 2e-29 seq3 134 2e-29 >seq1254 Length=1139494 Score = 134 bits (148), Expect = 2e-29 Identities = 102/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | ||| || |||||||||| || || ||||||| ||| |||| Sbjct 536 GTACGAGAGGAACCGTT-AGTTCGGA-TAATTGGTTTATGGGGTTGTCTGAACAGACAGT 593 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 594 GCCCCGAAGCTACCATCCGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGC 651 >seq28 Length=1232018 Score = 134 bits (148), Expect = 2e-29 Identities = 102/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | ||| || |||||||||| || || ||||||| ||| |||| Sbjct 1329 GTACGAGAGGAACCGTT-AGTTCGGA-TAATTGGTTTATGGGGTTGTCTGAACAGACAGT 1272 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 1271 GCCCCGAAGCTACCATCCGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGC 1214 >seq3 Length=7313625 Score = 134 bits (148), Expect = 2e-29 Identities = 102/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | ||| || |||||||||| || || ||||||| ||| |||| Sbjct 5260083 GTACGAGAGGAACCGTT-AGTTCGGA-TAATTGGTTTATGGGGTTGTCTGAACAGACAGT 5260140 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 5260141 GCCCCGAAGCTACCATCCGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGC 5260198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819189921280