Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq583 554 1e-155 seq555 554 1e-155 seq10 114 4e-23 seq17 84.2 7e-14 >seq583 Length=2047 Score = 554 bits (614), Expect = 1e-155 Identities = 433/510 (85%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| | |||| || ||||| | || ||||||||||||||||||||| Sbjct 1278 CTCATTCCAATTGCCAGACTTGTAAAAGCCCGGCATTGTTATTTATTGTCACTACCTCCC 1219 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1218 TGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTCTCT 1159 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| Sbjct 1158 CAGGCTCCCTCTCCGGAATCGAACCCCAATTCCCCGTTACCCGTTAAAGCCATGGTAGGC 1099 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || ||||||||| |||| |||||||||||||| ||||||||| | ||||| || || Sbjct 1098 CAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGAAACGTCGCC-GCCGAA 1040 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAG-GGCGTTGGT 300 | | |||||| || |||| ||||||| |||||| | || |||||| || |||| Sbjct 1039 G--CGTGCGATCCG-CAAGTGATTATGATTCACCACAAAACCGTCCGAAGACGCATTGG- 984 Query 301 TTTTTATCTAATAAATACACCCCTTCC------GAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| |||||| ||| || ||| ||| | ||| ||| |||| ||||||||||| Sbjct 983 TTTCGGTCTAATCAATGCAACCCGTCCGCCGAGGCAGTTGGGCTTTTGTGCATGTATTAG 924 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||||||||||||||| ||| |||||||||| || |||||| Sbjct 923 CTCTAGAATTACTACGGTTATCCATGTAGTAAGGGACTTTCAAATAAACTATGACTGATA 864 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| Sbjct 863 TAATGAGCCATTCGCAGTTTCACAGTATAAAGCGCTTATACTTAGACATGCATGGCTTAA 804 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| ||||||||||||||| Sbjct 803 TCTTTGAGACAAGCGTATGACTACTGGCAG 774 >seq555 Length=2081 Score = 554 bits (614), Expect = 1e-155 Identities = 433/510 (85%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| | |||| || ||||| | || ||||||||||||||||||||| Sbjct 1297 CTCATTCCAATTGCCAGACTTGTAAAAGCCCGGCATTGTTATTTATTGTCACTACCTCCC 1238 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1237 TGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTCTCT 1178 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| Sbjct 1177 CAGGCTCCCTCTCCGGAATCGAACCCCAATTCCCCGTTACCCGTTAAAGCCATGGTAGGC 1118 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || ||||||||| |||| |||||||||||||| ||||||||| | ||||| || || Sbjct 1117 CAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGAAACGTCGCC-GCCGAA 1059 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAG-GGCGTTGGT 300 | | |||||| || |||| ||||||| |||||| | || |||||| || |||| Sbjct 1058 G--CGTGCGATCCG-CAAGTGATTATGATTCACCACAAAACCGTCCGAAGACGCATTGG- 1003 Query 301 TTTTTATCTAATAAATACACCCCTTCC------GAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| |||||| ||| || ||| ||| | ||| ||| |||| ||||||||||| Sbjct 1002 TTTCGGTCTAATCAATGCAACCCGTCCGCCGAGGCAGTTGGGCTTTTGTGCATGTATTAG 943 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||||||||||||||| ||| |||||||||| || |||||| Sbjct 942 CTCTAGAATTACTACGGTTATCCATGTAGTAAGGGACTTTCAAATAAACTATGACTGATA 883 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| Sbjct 882 TAATGAGCCATTCGCAGTTTCACAGTATAAAGCGCTTATACTTAGACATGCATGGCTTAA 823 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| ||||||||||||||| Sbjct 822 TCTTTGAGACAAGCGTATGACTACTGGCAG 793 >seq10 Length=4527641 Score = 114 bits (126), Expect = 4e-23 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 |||||||||||||||| ||||| | || ||||||||||||| | ||||||||||||| Sbjct 1207275 CTCCCTCTCCGGAATCAAACCCCAGTTACCCGTTACCCGTTAAAGCCATGGTAGGCCAAC 1207216 Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 228 | ||||||||| |||| ||| |||||||| | ||||||||| Sbjct 1207215 ACCCTACCATCCAAAGCTGAGAGGGCAGACACTTGAATGAA 1207175 >seq17 Length=5807719 Score = 84.2 bits (92), Expect = 7e-14 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 44 ATTTATTGTCACT--ACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 |||| ||||| || ||||||| |||| |||||||||||||| |||||||| ||||||| Sbjct 4938783 ATTTTTTGTCGCTCTACCTCCCTCTGTCAGGATTGGGTAATTTACGCGCCTGTTGCCTTC 4938724 Query 102 CTTGGATGTG 111 |||||||||| Sbjct 4938723 CTTGGATGTG 4938714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510380817920