Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq14 87.8 1e-12 seq33 84.2 2e-11 >seq11 Length=5521395 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || || |||||| || |||| ||||||| || || ||||| || || | | || Sbjct 2274909 AGATACCTCGTCGGGGTCGGTGTACTCGATGATCTCCGTGCAGAGGTTGGAGGACTTGAT 2274850 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 ||||||||| |||| || || ||||||| ||||| || |||||| ||| ||||||||| Sbjct 2274849 GGTGCCCAAGTTCTTCTGGTTGCTCTTGCTGTTGCACGCGTCCTTGAACAGCATGTACGG 2274790 Query 66151 AGTGCCGGTCTCAACTTGGG 66170 ||||| |||||||| |||| Sbjct 2274789 CGTGCCAGTCTCAACCTGGG 2274770 >seq14 Length=3614499 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/135 (76%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 |||||||| || || ||||||||||||||||| ||||| ||||| ||||| ||| || Sbjct 1008525 TCGGAGGCCCGGTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGGTG 1008584 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGA-TTGTTC 61401 ||||| | || ||||| |||||| ||| ||| || | || ||| || | | | ||| Sbjct 1008585 TACAGCCTCCTGATCGACACGTACGTCAAGGACGCCGCCGAGAA---GACCCACCTCTTC 1008641 Query 61402 AATGCCATCGAGACG 61416 || ||||| |||||| Sbjct 1008642 AACGCCATGGAGACG 1008656 >seq33 Length=4484617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 ||||| || ||||| ||| ||||||| ||||| || |||||||| ||||||||| || Sbjct 716610 TTTGC-GCGATCTTCTGGCTGAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTCTCTAAC 716552 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||| |||| || ||||||||||| |||| || || || || Sbjct 716551 GAGATGATCTCGCGCGACGAGGGGCTGCACTGCGACTTCGC 716511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561846392800