Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1065 289 1e-75 seq402 199 2e-48 >seq1065 Length=2073 Score = 289 bits (320), Expect = 1e-75 Identities = 265/335 (79%), Gaps = 36/335 (11%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||| || |||| || |||||||||||| |||||||||||||||||||||||| Sbjct 363 GATGCTGACGAGATGGCGTCAATCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 304 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCC---GTGCGCGTAATGAAAGTGAACG-------- 490 ||||||||| ||||||||||||||| |||||| ||||||||| || | Sbjct 303 GTATGCGAGTACTTGGGTGTCAAACCCTCGGTGCGC--AATGAAAGTAAAGGTTAGTTTC 246 Query 491 -----------GAGGTGGGAACC--CGTGAGGG-------TGCACCATCGACCGATCCTG 530 | ||| ||| |||| | | ||||||||||||||||| || Sbjct 245 GGCTAACTTTGGTGGTAGGATGTGTCGTGTGTGGCATATCTGCACCATCGACCGATCATG 186 Query 531 ATGTCTTCG--GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAAC 588 || |||| | || ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 185 AT-TCTTTGATGAAAGATTTGAGTCTGAGCATATCTGTTGGGACCCGAAAGATGGTGAAC 127 Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 ||||||||||||||| |||||||| |||||| |||||||||||||| |||| ||||| || Sbjct 126 TATGCCTGAATAGGGCGAAGCCAGGGGAAACCCTGGTGGAGGCTCGAAGCGATTCTGACG 67 Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||||||||||||||||| Sbjct 66 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 32 Score = 203 bits (224), Expect = 1e-49 Identities = 147/170 (86%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||||||||||||||| |||||| ||||||||||| |||| |||||||| | ||||||| Sbjct 830 TTCGACGAGTCGAGTTGCTTGGGACTGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAG 771 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| |||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 770 CTAAATATTGGTAGGAGACCGATAGCAAACAAGTACTGTGAAGGAAAGATGAAAAGAACT 711 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| ||||||||| ||| || || |||||||| ||||||||||||| ||| Sbjct 710 TTGAAAAGAGAGTGAAAGAGTACTTGAAATTGCTGAAAGGGAAGCGATTG 661 >seq402 Length=1085 Score = 199 bits (220), Expect = 2e-48 Identities = 146/170 (86%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||||||||||||||| |||||| ||||||||||| |||| |||||||| | ||||||| Sbjct 627 TTCGACGAGTCGAGTTGCTTGGGACTGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAG 686 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| || ||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 687 CTAAATATTGGTAGGAAACCGATAGCAAACAAGTACTGTGAAGGAAAGATGAAAAGAACT 746 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| ||||||||| ||| || || |||||||| ||||||||||||| ||| Sbjct 747 TTGAAAAGAGAGTGAAAGAGTACTTGAAATTGCTGAAAGGGAAGCGATTG 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079827155900