Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1961 122 1e-25 seq675 122 1e-25 seq156 122 1e-25 >seq1961 Length=17148 Score = 122 bits (134), Expect = 1e-25 Identities = 97/114 (85%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | | || | ||||||||| ||||| || |||| |||||||| Sbjct 17101 GTACGAGAGGAACCGTTGGGT-CACA-TAATTGGTTCATGCGGTTGCCTGAACAGGCAGT 17044 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||| ||| || |||||||||||||||||||||||| |||||||| Sbjct 17043 GCCGCGAAGCTATCATGTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCC 16990 >seq675 Length=33256 Score = 122 bits (134), Expect = 1e-25 Identities = 97/114 (85%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | | || | ||||||||| ||||| || |||| |||||||| Sbjct 33091 GTACGAGAGGAACCGTTGGGT-CACA-TAATTGGTTCATGCGGTTGCCTGAACAGGCAGT 33034 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||| ||| || |||||||||||||||||||||||| |||||||| Sbjct 33033 GCCGCGAAGCTATCATGTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCC 32980 >seq156 Length=214095 Score = 122 bits (134), Expect = 1e-25 Identities = 97/114 (85%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | | || | ||||||||| ||||| || |||| |||||||| Sbjct 214048 GTACGAGAGGAACCGTTGGGT-CACA-TAATTGGTTCATGCGGTTGCCTGAACAGGCAGT 213991 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||| ||| || |||||||||||||||||||||||| |||||||| Sbjct 213990 GCCGCGAAGCTATCATGTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCC 213937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819136051712