Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq288 538 1e-150 seq154 536 4e-150 seq1886 389 1e-105 seq226 242 1e-61 seq550 172 2e-40 seq145 143 8e-32 >seq288 Length=38537 Score = 538 bits (596), Expect = 1e-150 Identities = 426/504 (85%), Gaps = 28/504 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | |||| | || ||||| ||||| ||||||||||| Sbjct 135 GTACTCATTCCAATTACGAAACCCGTTGGGTTCC-GTATCGTTATTTCATGTCACTACCT 193 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 194 CCCTGTGTTAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 253 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| Sbjct 254 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAGCCATGGTA 313 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || |||||||||||||| |||||||||||||| ||||||||| |||||| | Sbjct 314 GGCCAATACCCTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGAAACATCGCTG--- 370 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||| |||||||||| ||||||||||| ||| ||| || | ||||| Sbjct 371 CAAG----AGCGATTCGTTCAGTTATTATGATTCA---------CCCAAA--GTGTTGG- 414 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 || |||||||||||||||||| | || ||||||| ||||||||||||||||| Sbjct 415 TTAGTATCTAATAAATACACCCTT---GA--CAGGGGTTTAGCGCATGTATTAGCTCTAG 469 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||||||||| ||| ||||||||| |||| ||||||||| |||||| Sbjct 470 AATTACTACGGTTATCCATGTAG--AGGGACTATCAAAGAAACTATAACTGATATAATGA 527 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||| Sbjct 528 GCCATTCGCAGTTTCACCGTATA-AAGGTTTATACTTAGACATGCATGGCTTAATCTTTG 586 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||||||||| Sbjct 587 AGACAAGCGTATGACTACTGGCAG 610 >seq154 Length=164348 Score = 536 bits (594), Expect = 4e-150 Identities = 426/504 (85%), Gaps = 28/504 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | |||| | || ||||| |||||| |||| |||||| Sbjct 164338 GTACTCATTCCAATTACGAAACCCTTTGGGTTCC-GTATCGGTATTTCTTGTSRCTACCT 164280 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 164279 CCCTGTGTTAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 164220 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| Sbjct 164219 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAGCCATGGTA 164160 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || |||||||||||||| |||||||||||||| ||||||||| |||||| | Sbjct 164159 GGCCAATACCCTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGAAACATCGCTG--- 164103 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||| || |||||||||| ||||||||||| ||| ||| || ||||| Sbjct 164102 CAA---CA-GCGATTCGTTCAGTTATTATGATTCA---------CCCAAA--ATGTTGG- 164059 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 || |||||||||||||||||| | || |||| || ||||||||||||||||| Sbjct 164058 TTAGTATCTAATAAATACACCCTT---GA--CAGGGGGTTAGCGCATGTATTAGCTCTAG 164004 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||||||||| ||| ||||||||| |||| ||||||||| |||||| Sbjct 164003 AATTACTACGGTTATCCATGTAG--AGGGACTATCAAAGAAACTATAACTGATATAATGA 163946 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| Sbjct 163945 GCCATTCGCAGTTTCACCGTATA-AAGGCTTATACTTAGACATGCATGGCTTAATCTTTG 163887 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||||||||| Sbjct 163886 AGACAAGCGTATGACTACTGGCAG 163863 >seq1886 Length=21554 Score = 389 bits (430), Expect = 1e-105 Identities = 317/377 (84%), Gaps = 27/377 (7%) Strand=Plus/Plus Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 |||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | Sbjct 1 CTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTAAAGCCATGGTAGGCCAAT 60 Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC 247 | |||||||||||||| |||||||||||||| ||||||||| |||||| | ||| | Sbjct 61 ACCCTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGAAACATCGCTG---CAA---C 114 Query 248 ATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTAT 307 | |||||||||| ||||||||||| ||| ||| || ||||| || ||| Sbjct 115 A-GCGATTCGTTCAGTTATTATGATTCA---------CCCAAA--ATGTTGG-TTAGTAT 161 Query 308 CTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 ||||||||||||||| | || |||| || ||||||||||||||||||||||| Sbjct 162 CTAATAAATACACCCTT---GA--CAGGGGGTTAGCGCATGTATTAGCTCTAGAATTACT 216 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||| Sbjct 217 ACGGTTATCCATGTAG--AGGGACTATCAAAGAAACTATAACTGATATAATGAGCCATTC 274 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 275 GCAGTTTCACCGTATA-AAGGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 333 Query 488 CATATGACTACTGGCAG 504 | ||||||||||||||| Sbjct 334 CGTATGACTACTGGCAG 350 >seq226 Length=72360 Score = 242 bits (268), Expect = 1e-61 Identities = 175/200 (88%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 |||||||||||||||||| | | |||| || ||||||||||||||||||||| Sbjct 72359 TATCTAATAAATACACCCTTGACA-----GGGGGTTAGCGCATGTATTAGCTCTAGAATT 72305 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 || |||||||||||||||| ||| ||||||||| |||| ||||||||| |||||||||| Sbjct 72304 ACTACGGTTATCCATGTAG--AGGGACTATCAAAGAAACTATAACTGATATAATGAGCCA 72247 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 72246 TTCGCAGTTTCACCGTATAAAG-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 72188 Query 485 AAGCATATGACTACTGGCAG 504 |||| ||||||||||||||| Sbjct 72187 AAGCGTATGACTACTGGCAG 72168 >seq550 Length=51557 Score = 172 bits (190), Expect = 2e-40 Identities = 117/129 (91%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 376 CCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 |||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct 1 CCATGTAG--AGGGACTATCAAAGAAACTATAACTGATATAATGAGCCATTCGCAGTTTC 58 Query 436 ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 || ||||| | | ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 59 ACCGTATAAAG-GTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGAC 117 Query 496 TACTGGCAG 504 ||||||||| Sbjct 118 TACTGGCAG 126 >seq145 Length=45104 Score = 143 bits (158), Expect = 8e-32 Identities = 90/96 (94%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||| Sbjct 45104 CTGATATAATGAGCCATTCGCAGTTTCACCGTATAAAG-GCTTATACTTAGACATGCATG 45046 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 45045 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 45010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510278291968