Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halocafeteria_20seosinensis_20[genbank_20GCA_5F001687465.1_202016- 07-19] 8,058 sequences; 44,620,845 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1217 140 3e-28 seq5 107 2e-18 >seq1217 Length=25202 Score = 140 bits (154), Expect = 3e-28 Identities = 263/383 (69%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 |||||||| | || ||| || || ||||| || ||||| || || || ||||||||| Sbjct 14656 CCCATCAGCAAGAAGCAGTCAGCAAGGCCTTGCACACCAATGCCAATTGGGCGATGACGC 14715 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 | ||||| | ||||| || ||||| |||||||| | ||| || | | |||| | Sbjct 14716 ATGTTGGAGTTGCGTGCCTCGGGCACAGGATAGTAATTCAGATCAATGACTTGGTTCAGA 14775 Query 65915 TTGCGTGTCACCACA--TGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGAC 65972 ||||| || || || || | || | || | || || ||||||| | | ||| Sbjct 14776 TTGCGCGTGACGACCCTTGTAACATCCTTCAGA--TGCTCATGGTCAAAATATGTCCGAC 14833 Query 65973 GATCGGGAG-TGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031 ||| | | | | ||||||| | ||||||| || || |||||||| Sbjct 14834 CATCCTCATCTTCTTG----CACAAACATATTCAGGGCAATGCTGGCAAGATTGCAGACT 14889 Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 ||| |||| || |||||||| ||||| ||||||||||| |||| || ||| || Sbjct 14890 GCTGTCTCATCTGGAGCGGTGTACTCTACAATTTCGGTACACAAGTTGGAGCACTTGATT 14949 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 || || | ||| |||||||| || || |||||| | ||||||||| | ||| |||||| Sbjct 14950 GTACCAAGATTTTGTTGATTGCTTTTCGCATTGCACGAATCCTTGTAGAGCATATACGGA 15009 Query 66152 GTGCCGGTCTCAACTTGGGACTC 66174 ||||| || |||| ||| || || Sbjct 15010 GTGCCTGTTTCAATTTGAGAATC 15032 >seq5 Length=391144 Score = 107 bits (118), Expect = 2e-18 Identities = 286/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Minus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || |||||||| || || ||||| || || |||||| | ||| || || ||| Sbjct 174939 GCTTTCTTTGCTGCAAGCGATGGTATTGTGAACGAGAATCTCGCTGAAAACTTTGC-CAG 174881 Query 61273 -GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || |||||| | || || || ||||||||||| ||||| || || |||| || | Sbjct 174880 CGAAGTACAAGTGCCTGAAGCTCGCTGTTTCTACGGTTTCCAAATCGCTGTGGAAAACAT 174821 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 ||| || || | || | |||||||| || ||||| | || | || | || Sbjct 174820 CCATTCTGAAGTCTATTCACTCCTCATCGACACTTACATTAAAGATAAG----AAAGAGA 174765 Query 61392 ACGAT----TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGG 61447 | || | ||||| || ||| | || || || ||||| ||||| || || |||| Sbjct 174764 AAGACCACCTTTTCAACGCAATCCAAACCATCCCCTGTGTGAAACGGAAGGCAGACTGGG 174705 Query 61448 C-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCG 61506 | || |||| | | | | | | || | ||| ||||||| | | |||||||| Sbjct 174704 CGCTGCAATGGACAGATCCGGCTTATGCCTCC-TTTCCTGAACGAGTTATTGCATTTGCT 174646 Query 61507 GTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGT 61566 | || || || | |||||| || || || | ||||||||||| | || || | Sbjct 174645 GCTGTTGAAGGAATCTTTTTCTCGGGTTCATTCTGCTCAATCTTTTGGATAAAAAAGAGG 174586 Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 ||||||||||| ||||| |||| ||||| ||||| || | ||||| || | ||| Sbjct 174585 GGACTTATGCCTGGTCTCTGCTTCTCTAATGAATTGATTTCCAGGGACGAAGGACTACAT 174526 Query 61627 TGTGATTTTGC 61637 |||||||| || Sbjct 174525 TGTGATTTCGC 174515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397528956089120