Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1378 154 2e-35 seq7233 150 2e-34 >seq1378 Length=788 Score = 154 bits (170), Expect = 2e-35 Identities = 146/183 (80%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGAATACATTACCATG 70 ||| || |||||||||||||| ||||||||||||| | || | | |||||||| |||| Sbjct 49 TTTTCTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCGTTGGATACATTAGCATG 108 Query 71 GAATAATAGAATAGGACGT-GCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--GTAAT 127 ||||||| ||||| | | | ||| |||||||| ||||| | |||| ||||| Sbjct 109 GAATAATGAGATAGGGCCTTGATGTTTTATTTTGTTGGTTTGCA----CGCCAAGGTAAT 164 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| |||||| | |||||||||||||| |||||||||||||||||| Sbjct 165 GATTAATAGGGATAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 224 Query 188 TAT 190 ||| Sbjct 225 TAT 227 >seq7233 Length=843 Score = 150 bits (166), Expect = 2e-34 Identities = 143/179 (80%), Gaps = 9/179 (5%) Strand=Plus/Minus Query 17 CTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGAATACATTACCATGGAAT 74 || |||||||||||||| ||||||||||||| | || | | |||||||| |||||||| Sbjct 843 CTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCGTTGGATACATTAGCATGGAAT 784 Query 75 AATAGAATAGGACGT-GCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--GTAATGATA 131 ||| ||||| | | | ||| |||||||| ||||| | |||| |||||||| Sbjct 783 AATGAGATAGGGCCTTGATGTTTTATTTTGTTGGTTTGCA----CGCCAAGGTAATGATT 728 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| ||||||| |||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 727 AATAGGGATAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511892918560