Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq10306 113 1e-22 seq3376 113 1e-22 >seq10306 Length=3084 Score = 113 bits (124), Expect = 1e-22 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 ||||||||| |||| |||||||||||||||||| | ||| |||||| |||||||||| Sbjct 2421 AGCCCCGGCCAACTTCGTGCCAGCAGCCGCGGTTAGACGATGGGGGCGAGCGTTATCCAT 2480 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTT 105 ||| |||||||||||||||| ||||||| ||| Sbjct 2481 AATGACTGGGCGTAAAGGGTTCGTAGGTTGTT 2512 Score = 89.7 bits (98), Expect = 1e-15 Identities = 84/106 (79%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 227 AGGAACACC-AGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 ||||| ||| | |||| |||||| | || | | | ||| ||| || || |||||| Sbjct 2634 AGGAAGACCGATTGGCACAGGCGGGCTACTAGTTTTTTACTAACATTGGGGAACGAAAGT 2693 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331 |||||||||||||||||||||| ||||||||||||||| || |||| Sbjct 2694 GTGGGGAGCAAACAGGATTAGAGACCCTGGTAGTCCACACCCTAAA 2739 >seq3376 Length=2897 Score = 113 bits (124), Expect = 1e-22 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 ||||||||| |||| |||||||||||||||||| | ||| |||||| |||||||||| Sbjct 1092 AGCCCCGGCCAACTTCGTGCCAGCAGCCGCGGTTAGACGATGGGGGCGAGCGTTATCCAT 1033 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTT 105 ||| |||||||||||||||| ||||||| ||| Sbjct 1032 AATGACTGGGCGTAAAGGGTTCGTAGGTTGTT 1001 Score = 89.7 bits (98), Expect = 1e-15 Identities = 84/106 (79%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 227 AGGAACACC-AGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 ||||| ||| | |||| |||||| | || | | | ||| ||| || || |||||| Sbjct 879 AGGAAGACCGATTGGCACAGGCGGGCTACTAGTTTTTTACTAACATTGGGGAACGAAAGT 820 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331 |||||||||||||||||||||| ||||||||||||||| || |||| Sbjct 819 GTGGGGAGCAAACAGGATTAGAGACCCTGGTAGTCCACACCCTAAA 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202940241152