Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq10306 87.8 4e-15 seq3376 87.8 4e-15 >seq10306 Length=3084 Score = 87.8 bits (96), Expect = 4e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 84 AGAAGTTTACAATCCGTAGAAC-CTTCA-TCCTTCACGCTACT-TGGCTGGTTCAGACTC 140 |||| ||||||| | || | ||||| || ||| || || | | ||||| ||| ||| Sbjct 2385 AGAACTTTACAACCTCAAGGAGTCTTCAATCGTTCGCG-TAGTATAGCTGGATCACACTT 2327 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | || |||| ||||||||||||||||||| | | || || ||| || |||||||| Sbjct 2326 TTGTGTATTGTCCAATATTCCTCACTGCTGGCCTCAAAAGAAGCCTGGGCCTTGTCTCAG 2267 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||||||| | ||| |||| |||| ||| || || Sbjct 2266 TCCCAGTGTGGCTGATCATCCTCTCAGACCAACTAAAGATCGATGGCTTGGTAAGCATTT 2207 Query 261 ACCCCGCCTACTACCTAAT 279 ||| || || ||||||| Sbjct 2206 ACCTTACCAACAACCTAAT 2188 >seq3376 Length=2897 Score = 87.8 bits (96), Expect = 4e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 84 AGAAGTTTACAATCCGTAGAAC-CTTCA-TCCTTCACGCTACT-TGGCTGGTTCAGACTC 140 |||| ||||||| | || | ||||| || ||| || || | | ||||| ||| ||| Sbjct 1128 AGAACTTTACAACCTCAAGGAGTCTTCAATCGTTCGCG-TAGTATAGCTGGATCACACTT 1186 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | || |||| ||||||||||||||||||| | | || || ||| || |||||||| Sbjct 1187 TTGTGTATTGTCCAATATTCCTCACTGCTGGCCTCAAAAGAAGCCTGGGCCTTGTCTCAG 1246 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||||||| | ||| |||| |||| ||| || || Sbjct 1247 TCCCAGTGTGGCTGATCATCCTCTCAGACCAACTAAAGATCGATGGCTTGGTAAGCATTT 1306 Query 261 ACCCCGCCTACTACCTAAT 279 ||| || || ||||||| Sbjct 1307 ACCTTACCAACAACCTAAT 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068569256768