Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5708 482 7e-134 seq11564 228 2e-57 >seq5708 Length=583 Score = 482 bits (534), Expect = 7e-134 Identities = 384/457 (84%), Gaps = 11/457 (2%) Strand=Plus/Plus Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 CCTCCCTGAGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 60 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 | ||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||| Sbjct 61 ATCTCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCGTTACCCGTTAAAGCCATG 120 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||||||| || ||||||||| |||| |||||||||||||| ||||||||| |||||||| Sbjct 121 GTAGGCCAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGAAACATCGCCG 180 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGG---- 292 | | | ||||||||||| || |||| |||| |||||| | | | | | | Sbjct 181 CCCAGAAGGCATGCGATTCGCAAACTTATCATGACTCACCACAATACCGGTGCAAGCACC 240 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA---GTCGGGGTTTTTAG--CAT 347 || |||| || |||||||||||||| ||| ||| | ||| ||| | ||| ||| Sbjct 241 GCATTGGCTTCG-ATCTAATAAATACATCCCCCCCGCAAGCGTCAGGGACTGTAGTGCAT 299 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| | Sbjct 300 GTATTAGCTCTAGAATTACTACGGTTATCCAAGTAGTAAGGGACTATCAAATAAATTAGT 359 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||| ||||||||||||||||||||||| ||| | |||||| ||||||||||||||| Sbjct 360 ACTGATATAATGAGCCATTCGCAGTTTCACGGTAAAAGTTGCTTTTACTTAGACATGCAT 419 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| ||||||||||||||| Sbjct 420 GGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 456 >seq11564 Length=532 Score = 228 bits (252), Expect = 2e-57 Identities = 147/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| Sbjct 11 GCATGTATTAGCTCTAGAATTACTACGGTTATCCAAGTAGTAAGGGACTATCAAATAAAT 70 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 | |||||| ||||||||||||||||||||||| ||| | |||||| ||||||||||| Sbjct 71 TAGTACTGATATAATGAGCCATTCGCAGTTTCACGGTAAAAGTTGCTTTTACTTAGACAT 130 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| ||||||||||||||| Sbjct 131 GCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510073919744