Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12022 127 2e-24 seq869 116 3e-21 seq868 116 3e-21 seq867 116 3e-21 seq866 116 3e-21 seq12021 109 4e-19 seq9502 95.1 1e-14 seq20382 91.5 1e-13 >seq12022 Length=1470 Score = 127 bits (140), Expect = 2e-24 Identities = 244/357 (68%), Gaps = 2/357 (1%) Strand=Plus/Minus Query 66017 GCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGA 66076 || |||||||| ||||| | ||| || | || ||||| |||| || |||||| Sbjct 835 GCCAGGTTGCACACAGCCACCTCCTCTGCGCTAGTGTACTCCACAACCTCACAGCACAGG 776 Query 66077 TTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTG 66136 || |||| || |||||||| ||||| || || ||||| | |||||| ||||||||| Sbjct 775 TTGCTGCTCTTGATTGTGCCCAAGTTCTGCTGGTTGCTCTTCCCATTGCAGGCATCCTTG 716 Query 66137 TACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCG 66196 ||||||||||| || ||||| ||||||| |||| || | ||| || ||| | | Sbjct 715 TACATCATGTAGGGGGTGCCTGTCTCAATCTGGGCATCTAGGATCCTGTACCACAAGTCC 656 Query 66197 CGTGCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTC 66255 | || |||| || || | | ||| ||| |||||| | ||| || | ||| Sbjct 655 TGAGCTCTCACGCGGCGCACAAACTTGCCCTCTGC-TTCGTAGCGAGTGTACAGCTCTTC 597 Query 66256 GAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315 ||| || ||||| || | || | || |||| |||||| ||||||| |||| Sbjct 596 GAAATCTTTGCCCCAGCAGTCTGCAAGCCCAGGGCACTGGTGTGGGCACATCAAGCACCA 537 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 || || || |||||| || |||| || || || || ||||| ||| ||||||| Sbjct 536 GTCTCCGTCTGCTTCTACGCGCTGCATGAAGAGGTCTGGGATCCACAGGCCGTAGAA 480 >seq869 Length=5680 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 66339 GCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAA 66398 |||| || || ||||||||||| ||| | ||||||||||| ||||| || | |||| Sbjct 515 GCATGAACAGGTCAGGTATCCACAGGCCATAGAAGAGATCACGTGCACGCTCAAGCTCAT 574 Query 66399 TGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||||||| || ||||||| ||| ||||| |||| ||||| |||||||| || || |||| Sbjct 575 TGCCGTGGTTCTTGCGCAGGTCAAGGAAGGCAAATATGTCTGCATGCCAGGGCTCAAGGT 634 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 | | || || || ||| |||| || || || || || Sbjct 635 ACACTGCAAATGACCCCTTACGCTTACCACCTCCCTG 671 >seq868 Length=5831 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 66339 GCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAA 66398 |||| || || ||||||||||| ||| | ||||||||||| ||||| || | |||| Sbjct 515 GCATGAACAGGTCAGGTATCCACAGGCCATAGAAGAGATCACGTGCACGCTCAAGCTCAT 574 Query 66399 TGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||||||| || ||||||| ||| ||||| |||| ||||| |||||||| || || |||| Sbjct 575 TGCCGTGGTTCTTGCGCAGGTCAAGGAAGGCAAATATGTCTGCATGCCAGGGCTCAAGGT 634 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 | | || || || ||| |||| || || || || || Sbjct 635 ACACTGCAAATGACCCCTTACGCTTACCACCTCCCTG 671 >seq867 Length=7666 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 66339 GCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAA 66398 |||| || || ||||||||||| ||| | ||||||||||| ||||| || | |||| Sbjct 341 GCATGAACAGGTCAGGTATCCACAGGCCATAGAAGAGATCACGTGCACGCTCAAGCTCAT 282 Query 66399 TGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||||||| || ||||||| ||| ||||| |||| ||||| |||||||| || || |||| Sbjct 281 TGCCGTGGTTCTTGCGCAGGTCAAGGAAGGCAAATATGTCTGCATGCCAGGGCTCAAGGT 222 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 | | || || || ||| |||| || || || || || Sbjct 221 ACACTGCAAATGACCCCTTACGCTTACCACCTCCCTG 185 >seq866 Length=7643 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 66339 GCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAA 66398 |||| || || ||||||||||| ||| | ||||||||||| ||||| || | |||| Sbjct 341 GCATGAACAGGTCAGGTATCCACAGGCCATAGAAGAGATCACGTGCACGCTCAAGCTCAT 282 Query 66399 TGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||||||| || ||||||| ||| ||||| |||| ||||| |||||||| || || |||| Sbjct 281 TGCCGTGGTTCTTGCGCAGGTCAAGGAAGGCAAATATGTCTGCATGCCAGGGCTCAAGGT 222 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 | | || || || ||| |||| || || || || || Sbjct 221 ACACTGCAAATGACCCCTTACGCTTACCACCTCCCTG 185 >seq12021 Length=1470 Score = 109 bits (120), Expect = 4e-19 Identities = 240/357 (67%), Gaps = 2/357 (1%) Strand=Plus/Minus Query 66017 GCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGA 66076 || |||||||| ||||| | ||| || | ||| ||||| |||| || ||||||| Sbjct 835 GCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACAACCTCACAGCACAGA 776 Query 66077 TTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTG 66136 || |||| || ||||||| || || || || ||||| | |||||| || |||||| Sbjct 775 TTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCATTGCAGGCGTCCTTG 716 Query 66137 TACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCG 66196 ||||||||||| || ||||| ||||||| || | || | || || ||| ||| | Sbjct 715 TACATCATGTAGGGGGTGCCTGTCTCAATCTGAGCATCTAGTATTCTGTACCACAGATCT 656 Query 66197 CGTGCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTC 66255 | || ||| || || | | ||| ||| |||||| | ||| || || Sbjct 655 TGAGCTCGCACGCGGCGCACAAACTTGCCCTCTGC-TTCGTAGCGAGTGTACAGCGCCTC 597 Query 66256 GAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315 ||| || ||||| || | || | || |||| |||||| ||||||| |||| Sbjct 596 GAACTCTTTGCCCCAGCAGTCTGCAAGCCCAGGGCACTGGTGTGGGCACATCAAGCACCA 537 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 || || || |||||| || |||| || || || || ||||| ||| ||||||| Sbjct 536 GTCTCCGTCTGCTTCTACGCGCTGCATGAAGAGGTCTGGGATCCACAGGCCGTAGAA 480 >seq9502 Length=9919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 66054 ACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTAC 66113 |||| | || || ||||| || || |||| || ||||| || ||||| || |||| Sbjct 7053 ACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTGGTTAC 7112 Query 66114 TCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 |||||| ||||| ||||||||||||| |||||| || ||||| ||||||||||| Sbjct 7113 TCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAACTTG 7167 >seq20382 Length=10560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 66054 ACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTAC 66113 |||| | || || ||||| || || |||| || ||||| || || || || |||| Sbjct 2999 ACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTGGTTAC 2940 Query 66114 TCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACT 66173 |||||| ||||| ||||||||||||| |||||| || ||||| ||||||||||| || Sbjct 2939 TCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAACTTGACTCT 2880 Query 66174 CAA 66176 ||| Sbjct 2879 CAA 2877 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 66394 CTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTC 66453 |||| ||||||| || ||||||||||| ||||| |||| || || || |||||||| || Sbjct 2103 CTCATTGCCGTGGTTCTTGCGCAAGTCAAGGAATGCAAATATATCTGCGTGCCATGGCTC 2044 Query 66454 CAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 ||||||||| || | || || |||| ||||| || || || || Sbjct 2043 CAGGTAGATAGCTATTGATCCTTTACGCTTGCCACCTCCCTGTTC 1999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397463393522960