Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq4110 127 2e-27 seq3065 100 3e-19 >seq4110 Length=2169 Score = 127 bits (140), Expect = 2e-27 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| || || || Sbjct 805 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGGGCAGACAAAC 864 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||| | ||||| | | |||| || | || |||| ||| || ||||| || Sbjct 865 CTCGTTCTTTCAACTTAGCATATATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 924 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGC-GCATT 179 |||||| | |||||||| |||||| ||||||||| || |||| | || | ||||| Sbjct 925 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACT-GC-TGGCAAACATTATACAGCATT 982 Query 180 CGGAGTTTGGCAGGACTTG 198 ||||||||| ||||| ||| Sbjct 983 CGGAGTTTGTCAGGAATTG 1001 >seq3065 Length=3725 Score = 100 bits (110), Expect = 3e-19 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| |||||| |||||||||| || |||||||| |||||| || || ||| Sbjct 3047 GCACTCTTTAAATGAATTGCTGCTTCCAAGCAAACATCCTGGCTGTCTCTGCAGTCGGAC 3106 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 | |||| | ||||| | | |||| || | || |||| || || || ||| || Sbjct 3107 CCCCTTAGTTCAACTTAGCATATATTTTGGGACCTTAGCTGATGCTCTGGGTTGTTCCCC 3166 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGC-ATT 179 |||||| | |||||||| ||||| ||||||||| || | || | |||| | ||| Sbjct 3167 TCTCGGACTGGGACCTTAGCACCCCAGCCCTCACTGCCGTGT-ATATC--ATGCCCCATT 3223 Query 180 CGGAGTTTGGCAG 192 ||||||||| ||| Sbjct 3224 CGGAGTTTGTCAG 3236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537551654136